RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 FAM160A1Q05DH4 1040 aa7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 MYCBPQ99417 103 aaPredicted RBP7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 DDX46Q7L014 1031 aaKnown RBP7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 P3H3Q8IVL6 736 aa7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 IPO9Q96P70 1041 aaKnown RBP7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 RABGAP1Q9Y3P9 1069 aa7.27□□□□□ -1.25
CDC42BPA-201ENST00000334218 ANKRD18AQ8IVF6 992 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 ANKRD13AQ8IZ07 590 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 SOGA1O94964 1423 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 ZFYP08048 801 aaPredicted RBP7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 AP1ARQ63HQ0 302 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 PUS7Q96PZ0 661 aaKnown RBP7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 EIF4G1Q04637 1599 aaKnown RBP7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 ITGAEP38570 1179 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 ANKRD20A12PQ8NF67 263 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 TEX2Q8IWB9 1127 aa7.26□□□□□ -1.25
CDC42BPA-201ENST00000334218 ERC1Q8IUD2 1116 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 BANK1Q8NDB2 785 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC114Q96M63 670 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 KIF5CO60282 957 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 STK3Q13188 491 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 TRIM52Q96A61 297 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC50Q8IVM0 306 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 USP6NLQ92738 828 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 GCOM1H8Y6P7 765 aaPredicted RBP7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 MYZAPP0CAP1 466 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 MCM3P25205 808 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 CASQ1P31415 396 aa7.25□□□□□ -1.25
CDC42BPA-201ENST00000334218 RPAINQ86UA6 219 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 ZNF777Q9ULD5 760 aaPredicted RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 CEP135Q66GS9 1140 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC39Q9UFE4 941 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 KAT6AQ92794 2004 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 H0YC42 278 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 TPD52P55327 224 aaPredicted RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 AIMP1Q12904 312 aaKnown RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 RBM19Q9Y4C8 960 aaKnown RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 RBM10P98175 930 aaKnown RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 GMNNO75496 209 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC92Q53HC0 331 aaPredicted RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 CNKSR2Q8WXI2 1034 aa7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 SMARCC1Q92922 1105 aaPredicted RBP7.24□□□□□ -1.25
CDC42BPA-201ENST00000334218 ATP6V1E2Q96A05 226 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 DRC1Q96MC2 740 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 FAM114A2Q9NRY5 505 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 ATP6V1DQ9Y5K8 247 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 TMF1P82094 1093 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 NUCKS1Q9H1E3 243 aaKnown RBP7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 CNPY4Q8N129 248 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 KIF1CO43896 1103 aaKnown RBP7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 IPO7O95373 1038 aaKnown RBP7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 ANO8Q9HCE9 1232 aaPredicted RBP7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 MYH10P35580 1976 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 MACROD2A1Z1Q3 448 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 LRRCC1Q9C099 1032 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 SMC6Q96SB8 1091 aa7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 NAP1L3Q99457 506 aaPredicted RBP7.23□□□□□ -1.25
CDC42BPA-201ENST00000334218 GBP7Q8N8V2 638 aaPredicted RBP7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 RAB3IL1Q8TBN0 382 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 BICD1Q96G01 975 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 IQCEQ6IPM2 695 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 TXLNBQ8N3L3 684 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 SEPT10Q9P0V9 454 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 IKBKGQ9Y6K9 419 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 ITGB1BP2Q9UKP3 347 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 NASPP49321 788 aaPredicted RBP7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 CIZ1Q9ULV3 898 aaPredicted RBP7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC174Q6PII3 467 aa7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 CTNNBL1Q8WYA6 563 aaPredicted RBP7.22□□□□□ -1.25
CDC42BPA-201ENST00000334218 HDGFP51858 240 aaKnown RBP7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 HNRNPUQ00839 825 aaKnown RBP eCLIP7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 CCDC181Q5TID7 509 aa7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 ANKRD18BA2A2Z9 1011 aa7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 H3BQV1 296 aa7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 MCM6Q14566 821 aa7.21□□□□□ -1.25
CDC42BPA-201ENST00000334218 KIF2AO00139 706 aaPredicted RBP7.21□□□□□ -1.26
CDC42BPA-201ENST00000334218 STMN1P16949 149 aa7.21□□□□□ -1.26
CDC42BPA-201ENST00000334218 CCDC27Q2M243 656 aa7.21□□□□□ -1.26
CDC42BPA-201ENST00000334218 RSRC1Q96IZ7 334 aaKnown RBP7.21□□□□□ -1.26
CDC42BPA-201ENST00000334218 KCNH8Q96L42 1107 aa7.21□□□□□ -1.26
CDC42BPA-201ENST00000334218 PMFBP1Q8TBY8 1022 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 BRD3Q15059 726 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 CCDC146Q8IYE0 955 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 MAP7D1Q3KQU3 841 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 SMC3Q9UQE7 1217 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 ISM2Q6H9L7 571 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 GBP3Q9H0R5 595 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 MTUS2Q5JR59 1369 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 PPP1R12BO60237 982 aaPredicted RBP7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 BCL11BQ9C0K0 894 aaPredicted RBP7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 GON4LQ3T8J9 2241 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 AEBP2Q6ZN18 517 aaPredicted RBP7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 FANCD2Q9BXW9 1451 aa7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 TACO1Q9BSH4 297 aaKnown RBP7.2□□□□□ -1.26
CDC42BPA-201ENST00000334218 PPFIA2O75334 1257 aa7.19□□□□□ -1.26
CDC42BPA-201ENST00000334218 NUCB1Q02818 461 aa7.19□□□□□ -1.26
CDC42BPA-201ENST00000334218 TAF7Q15545 349 aaPredicted RBP7.19□□□□□ -1.26
CDC42BPA-201ENST00000334218 MPP4Q96JB8 637 aa7.19□□□□□ -1.26
CDC42BPA-201ENST00000334218 FMNL2Q96PY5 1086 aa7.19□□□□□ -1.26
CDC42BPA-201ENST00000334218 MRE11P49959 708 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms