RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 KIF15Q9NS87 1388 aa9.52□□□□□ -0.89
CIITA-201ENST00000324288 CDR1P51861 262 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 OLFM4Q6UX06 510 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 ZHX1Q9UKY1 873 aaPredicted RBP9.51□□□□□ -0.89
CIITA-201ENST00000324288 CHMP4AQ9BY43 222 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 ANKRD30AQ9BXX3 1397 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 ATP2B1P20020 1258 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 FIBPO43427 364 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 NUCB2P80303 420 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 NEXNQ0ZGT2 675 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 NUTM2GQ5VZR2 741 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 FMNL2Q96PY5 1086 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 AIMP1Q12904 312 aaKnown RBP9.51□□□□□ -0.89
CIITA-201ENST00000324288 DCTN1Q14203 1278 aa9.51□□□□□ -0.89
CIITA-201ENST00000324288 CEBPZQ03701 1054 aaKnown RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 TRDNQ13061 729 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 CCDC47Q96A33 483 aaKnown RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 TMEM132AQ24JP5 1023 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 CGNL1Q0VF96 1302 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 ST20-MTHFSA0A0A6YYL1 179 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 PANK1Q8TE04 598 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 PRDM2Q13029 1718 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 BRPF1P55201 1214 aaPredicted RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 RUFY2Q8WXA3 655 aa9.5□□□□□ -0.89
CIITA-201ENST00000324288 HOOK1Q9UJC3 728 aaKnown RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 G3BP1Q13283 466 aaKnown RBP eCLIP9.5□□□□□ -0.89
CIITA-201ENST00000324288 FAM177A1Q8N128 213 aaPredicted RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 PRPF40AO75400 957 aaKnown RBP9.5□□□□□ -0.89
CIITA-201ENST00000324288 CPLX2Q6PUV4 134 aaKnown RBP9.49□□□□□ -0.89
CIITA-201ENST00000324288 FAM177BA6PVY3 158 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 REC8O95072 547 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.49□□□□□ -0.89
CIITA-201ENST00000324288 MYBBP1AQ9BQG0 1328 aaKnown RBP9.49□□□□□ -0.89
CIITA-201ENST00000324288 KIAA0754O94854 1291 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 WASHC4Q2M389 1173 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 NEUROD6Q96NK8 337 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 ZBED9Q6R2W3 1325 aa9.49□□□□□ -0.89
CIITA-201ENST00000324288 PAF1Q8N7H5 531 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 HMOX1P09601 288 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 FKBP5Q13451 457 aaPredicted RBP9.48□□□□□ -0.89
CIITA-201ENST00000324288 GPATCH11Q8N954 259 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 SDF4Q9BRK5 362 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 IKQ13123 557 aaPredicted RBP9.48□□□□□ -0.89
CIITA-201ENST00000324288 MTERF4Q7Z6M4 381 aaKnown RBP9.48□□□□□ -0.89
CIITA-201ENST00000324288 ERICH2A1L162 156 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 OFD1O75665 1012 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 E9PSI1 815 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 APAF1O14727 1248 aa9.48□□□□□ -0.89
CIITA-201ENST00000324288 RBM33Q96EV2 1170 aaKnown RBP9.48□□□□□ -0.89
CIITA-201ENST00000324288 GOLGA4Q13439 2230 aaKnown RBP9.48□□□□□ -0.89
CIITA-201ENST00000324288 ZNF526Q8TF50 670 aaPredicted RBP9.47□□□□□ -0.89
CIITA-201ENST00000324288 DEF6Q9H4E7 631 aa9.47□□□□□ -0.89
CIITA-201ENST00000324288 POLR3GO15318 223 aaPredicted RBP9.47□□□□□ -0.89
CIITA-201ENST00000324288 RIPK4P57078 832 aa9.47□□□□□ -0.89
CIITA-201ENST00000324288 IPO4Q8TEX9 1081 aaKnown RBP9.47□□□□□ -0.89
CIITA-201ENST00000324288 TAF3Q5VWG9 929 aa9.47□□□□□ -0.89
CIITA-201ENST00000324288 ERCC4Q92889 916 aaPredicted RBP9.47□□□□□ -0.89
CIITA-201ENST00000324288 RRP9O43818 475 aaKnown RBP9.47□□□□□ -0.89
CIITA-201ENST00000324288 SAFBQ15424 915 aaKnown RBP eCLIP9.47□□□□□ -0.89
CIITA-201ENST00000324288 NEFHP12036 1026 aa9.46□□□□□ -0.89
CIITA-201ENST00000324288 TICAM2Q86XR7 235 aa9.46□□□□□ -0.89
CIITA-201ENST00000324288 CCDC173Q0VFZ6 552 aa9.46□□□□□ -0.89
CIITA-201ENST00000324288 LRRFIP1Q32MZ4 808 aaKnown RBP9.46□□□□□ -0.9
CIITA-201ENST00000324288 VPS8Q8N3P4 1428 aa9.46□□□□□ -0.9
CIITA-201ENST00000324288 CCDC112Q8NEF3 446 aa9.46□□□□□ -0.9
CIITA-201ENST00000324288 PHLDB1Q86UU1 1377 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 TNNT1P13805 278 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 CBX1P83916 185 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 PHF23Q9BUL5 403 aaPredicted RBP9.45□□□□□ -0.9
CIITA-201ENST00000324288 RNF20Q5VTR2 975 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 TAX1BP1Q86VP1 789 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 CHMP4CQ96CF2 233 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 HMGN5P82970 282 aaKnown RBP9.45□□□□□ -0.9
CIITA-201ENST00000324288 RALYLQ86SE5 291 aaKnown RBP9.45□□□□□ -0.9
CIITA-201ENST00000324288 GIMAP7Q8NHV1 300 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 ANKRD62A6NC57 917 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 PSME1Q06323 249 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 GRPEL1Q9HAV7 217 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 FHOD3Q2V2M9 1422 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 EFCAB2Q5VUJ9 269 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 TSPYL4Q9UJ04 414 aa9.45□□□□□ -0.9
CIITA-201ENST00000324288 C11orf95C9JLR9 678 aaPredicted RBP9.44□□□□□ -0.9
CIITA-201ENST00000324288 CARMIL2Q6F5E8 1435 aa9.44□□□□□ -0.9
CIITA-201ENST00000324288 ENOX2Q16206 610 aaKnown RBP9.44□□□□□ -0.9
CIITA-201ENST00000324288 DZIP1LQ8IYY4 767 aaKnown RBP9.44□□□□□ -0.9
CIITA-201ENST00000324288 ATP2B2Q01814 1243 aa9.44□□□□□ -0.9
CIITA-201ENST00000324288 C1orf115Q9H7X2 142 aa9.44□□□□□ -0.9
CIITA-201ENST00000324288 FMN1Q68DA7 1419 aa9.44□□□□□ -0.9
CIITA-201ENST00000324288 RIC3Q7Z5B4 369 aa9.44□□□□□ -0.9
CIITA-201ENST00000324288 INTS3Q68E01 1043 aaKnown RBP9.43□□□□□ -0.9
CIITA-201ENST00000324288 PPP1R1BQ9UD71 204 aaPredicted RBP9.43□□□□□ -0.9
CIITA-201ENST00000324288 CGNQ9P2M7 1197 aaKnown RBP9.43□□□□□ -0.9
CIITA-201ENST00000324288 CCDC144AA2RUR9 1427 aa9.43□□□□□ -0.9
CIITA-201ENST00000324288 NAT10Q9H0A0 1025 aaKnown RBP9.43□□□□□ -0.9
CIITA-201ENST00000324288 USP47Q96K76 1375 aa9.43□□□□□ -0.9
CIITA-201ENST00000324288 EVC2Q86UK5 1308 aa9.43□□□□□ -0.9
CIITA-201ENST00000324288 DYDC1Q8WWB3 177 aa9.42□□□□□ -0.9
CIITA-201ENST00000324288 DNAJC2Q99543 621 aaKnown RBP9.42□□□□□ -0.9
CIITA-201ENST00000324288 CDC45O75419 566 aa9.42□□□□□ -0.9
CIITA-201ENST00000324288 DDX19BQ9UMR2 479 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms