RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 RABEP1Q15276 862 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 RNF20Q5VTR2 975 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 RUFY1Q96T51 708 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 H0YHG0 523 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 NCBP3Q53F19 620 aaKnown RBP8.52□□□□□ -1.05
SMC1A-201ENST00000322213 MCM2P49736 904 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 IPO4Q8TEX9 1081 aaKnown RBP8.52□□□□□ -1.05
SMC1A-201ENST00000322213 MYH13Q9UKX3 1938 aa8.52□□□□□ -1.05
SMC1A-201ENST00000322213 LMOD3Q0VAK6 560 aa8.51□□□□□ -1.05
SMC1A-201ENST00000322213 ESF1Q9H501 851 aaKnown RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 PRDM10Q9NQV6 1147 aa8.51□□□□□ -1.05
SMC1A-201ENST00000322213 HOOK1Q9UJC3 728 aaKnown RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 MAPK8IP2Q13387 824 aaPredicted RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 SPAG9O60271 1321 aaKnown RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 ST20-MTHFSA0A0A6YYL1 179 aa8.51□□□□□ -1.05
SMC1A-201ENST00000322213 DZIP1LQ8IYY4 767 aaKnown RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 MYH3P11055 1940 aa8.51□□□□□ -1.05
SMC1A-201ENST00000322213 ERCC4Q92889 916 aaPredicted RBP8.51□□□□□ -1.05
SMC1A-201ENST00000322213 CCDC112Q8NEF3 446 aa8.51□□□□□ -1.05
SMC1A-201ENST00000322213 PANK3Q9H999 370 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.5□□□□□ -1.05
SMC1A-201ENST00000322213 MYH1P12882 1939 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 MYH2Q9UKX2 1941 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 MYH4Q9Y623 1939 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 TIGD1Q96MW7 591 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 FOXD4L6Q3SYB3 417 aaPredicted RBP8.5□□□□□ -1.05
SMC1A-201ENST00000322213 FOXD4L3Q6VB84 417 aaPredicted RBP8.5□□□□□ -1.05
SMC1A-201ENST00000322213 ERICH4A6NGS2 130 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 PRIMPOLQ96LW4 560 aa8.5□□□□□ -1.05
SMC1A-201ENST00000322213 PDE3AQ14432 1141 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 CCDC192P0DO97 292 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 CCDC94Q9BW85 323 aaPredicted RBP8.49□□□□□ -1.05
SMC1A-201ENST00000322213 NCOA1Q15788 1441 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 K7ELQ4 463 aaPredicted RBP8.49□□□□□ -1.05
SMC1A-201ENST00000322213 CDC45O75419 566 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 TRIM5Q9C035 493 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 CHMP4AQ9BY43 222 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 EIF3JO75822 258 aaKnown RBP8.49□□□□□ -1.05
SMC1A-201ENST00000322213 PPP4R3BQ5MIZ7 849 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 AEBP1Q8IUX7 1158 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 RNF214Q8ND24 703 aa8.49□□□□□ -1.05
SMC1A-201ENST00000322213 DCTN1Q14203 1278 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.48□□□□□ -1.05
SMC1A-201ENST00000322213 CLGNO14967 610 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 CDR1P51861 262 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 NBPF1Q3BBV0 1214 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 RTF1Q92541 710 aaKnown RBP8.48□□□□□ -1.05
SMC1A-201ENST00000322213 HDAC5Q9UQL6 1122 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 TAOK2Q9UL54 1235 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 KIF2AO00139 706 aaPredicted RBP8.48□□□□□ -1.05
SMC1A-201ENST00000322213 HS1BP3Q53T59 392 aa8.48□□□□□ -1.05
SMC1A-201ENST00000322213 CBX1P83916 185 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 FGD5Q6ZNL6 1462 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 SF3A1Q15459 793 aaKnown RBP8.47□□□□□ -1.05
SMC1A-201ENST00000322213 DDX11Q96FC9 970 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 CCDC191Q8NCU4 936 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 CHMP7Q8WUX9 453 aaPredicted RBP8.47□□□□□ -1.05
SMC1A-201ENST00000322213 PLEKHH1Q9ULM0 1364 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 KIAA0754O94854 1291 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 PANK1Q8TE04 598 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 BICD2Q8TD16 824 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 IPO7O95373 1038 aaKnown RBP8.47□□□□□ -1.05
SMC1A-201ENST00000322213 HMGB1P09429 215 aaKnown RBP8.47□□□□□ -1.05
SMC1A-201ENST00000322213 PBRM1Q86U86 1689 aa8.47□□□□□ -1.05
SMC1A-201ENST00000322213 MYO18AQ92614 2054 aaKnown RBP8.47□□□□□ -1.05
SMC1A-201ENST00000322213 RUFY2Q8WXA3 655 aa8.46□□□□□ -1.05
SMC1A-201ENST00000322213 PRPF40AO75400 957 aaKnown RBP8.46□□□□□ -1.06
SMC1A-201ENST00000322213 FAM107BQ9H098 131 aa8.46□□□□□ -1.06
SMC1A-201ENST00000322213 PDCP20941 246 aa8.46□□□□□ -1.06
SMC1A-201ENST00000322213 FAM135AQ9P2D6 1515 aa8.46□□□□□ -1.06
SMC1A-201ENST00000322213 MAP2P11137 1827 aaKnown RBP8.46□□□□□ -1.06
SMC1A-201ENST00000322213 ANKRD20A12PQ8NF67 263 aa8.46□□□□□ -1.06
SMC1A-201ENST00000322213 STK31Q9BXU1 1019 aa8.46□□□□□ -1.06
SMC1A-201ENST00000322213 TERF1P54274 439 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 BCL2L13Q9BXK5 485 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 SMC3Q9UQE7 1217 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 SRPK2P78362 688 aaKnown RBP8.45□□□□□ -1.06
SMC1A-201ENST00000322213 CTR9Q6PD62 1173 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 SPC24Q8NBT2 197 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 PNISRQ8TF01 805 aaKnown RBP8.45□□□□□ -1.06
SMC1A-201ENST00000322213 PLCD3Q8N3E9 789 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 ZKSCAN1P17029 563 aaPredicted RBP8.45□□□□□ -1.06
SMC1A-201ENST00000322213 ZMYM4Q5VZL5 1548 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 RILPL2Q969X0 211 aa8.45□□□□□ -1.06
SMC1A-201ENST00000322213 CFTRP13569 1480 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 HDGFL2Q7Z4V5 671 aaPredicted RBP8.44□□□□□ -1.06
SMC1A-201ENST00000322213 RUNDC1Q96C34 613 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 SYCE3A1L190 88 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 ERLIN1O75477 346 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 CARMIL2Q6F5E8 1435 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 CT47B1P0C2W7 299 aaPredicted RBP8.44□□□□□ -1.06
SMC1A-201ENST00000322213 CCDC73Q6ZRK6 1079 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 CHMP3Q9Y3E7 222 aa8.44□□□□□ -1.06
SMC1A-201ENST00000322213 DHX29Q7Z478 1369 aaKnown RBP8.43□□□□□ -1.06
SMC1A-201ENST00000322213 WDR33Q9C0J8 1336 aaKnown RBP8.43□□□□□ -1.06
SMC1A-201ENST00000322213 TERF2IPQ9NYB0 399 aa8.43□□□□□ -1.06
SMC1A-201ENST00000322213 RRP7AQ9Y3A4 280 aaKnown RBP8.43□□□□□ -1.06
SMC1A-201ENST00000322213 KINO60870 393 aaKnown RBP8.43□□□□□ -1.06
SMC1A-201ENST00000322213 XPCQ01831 940 aaPredicted RBP8.43□□□□□ -1.06
SMC1A-201ENST00000322213 AQRO60306 1485 aaKnown RBP eCLIP8.43□□□□□ -1.068e-8■■■□□ 17
Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms