RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 SEC24BO95487 1268 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 CSPP1Q1MSJ5 1256 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 CCDC146Q8IYE0 955 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 TCP11L2Q8N4U5 519 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 PLB1Q6P1J6 1458 aa5.98□□□□□ -1.45
PTPN13-201ENST00000316707 MFAP1P55081 439 aaKnown RBP5.97□□□□□ -1.45
PTPN13-201ENST00000316707 EFCAB2Q5VUJ9 269 aa5.97□□□□□ -1.45
PTPN13-201ENST00000316707 PCDHB15Q9Y5E8 787 aa5.97□□□□□ -1.45
PTPN13-201ENST00000316707 MAGI2Q86UL8 1455 aa5.97□□□□□ -1.45
PTPN13-201ENST00000316707 OFD1O75665 1012 aa5.97□□□□□ -1.45
PTPN13-201ENST00000316707 HSP90AB1P08238 724 aaKnown RBP5.97□□□□□ -1.45
PTPN13-201ENST00000316707 SPINK5Q9NQ38 1064 aaPredicted RBP5.97□□□□□ -1.45
PTPN13-201ENST00000316707 KLHL40Q2TBA0 621 aa5.97□□□□□ -1.45
PTPN13-201ENST00000316707 TARBP1Q13395 1621 aaKnown RBP5.96□□□□□ -1.45
PTPN13-201ENST00000316707 NUCB2P80303 420 aa5.96□□□□□ -1.45
PTPN13-201ENST00000316707 PPP1R9BQ96SB3 815 aa5.96□□□□□ -1.45
PTPN13-201ENST00000316707 CALD1Q05682 793 aaKnown RBP5.96□□□□□ -1.46
PTPN13-201ENST00000316707 CLEC17AQ6ZS10 378 aa5.96□□□□□ -1.46
PTPN13-201ENST00000316707 PANK2Q9BZ23 570 aa5.96□□□□□ -1.46
PTPN13-201ENST00000316707 BMP2KLQ5H9B9 411 aa5.96□□□□□ -1.46
PTPN13-201ENST00000316707 ABCC11Q96J66 1382 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 IL16Q14005 1332 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 RAB3GAP1Q15042 981 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 E9PCH4 1651 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 NASPP49321 788 aaPredicted RBP5.95□□□□□ -1.46
PTPN13-201ENST00000316707 ARXQ96QS3 562 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 ATP10BO94823 1461 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 NCOA3Q9Y6Q9 1424 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 NCLP19338 710 aaKnown RBP5.95□□□□□ -1.46
PTPN13-201ENST00000316707 KIAA1211Q6ZU35 1233 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 NSD2O96028 1365 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 ADGBQ8N7X0 1667 aa5.95□□□□□ -1.46
PTPN13-201ENST00000316707 TNPO1Q92973 898 aaKnown RBP5.95□□□□□ -1.46
PTPN13-201ENST00000316707 NLRP1Q9C000 1473 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 GCC1Q96CN9 775 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 ADCY10Q96PN6 1610 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 LRRIQ1Q96JM4 1722 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 DDIT3P35638 169 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 ATF7IPQ6VMQ6 1270 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 ZNF692Q9BU19 519 aaPredicted RBP5.94□□□□□ -1.46
PTPN13-201ENST00000316707 DDX49Q9Y6V7 483 aaKnown RBP5.94□□□□□ -1.46
PTPN13-201ENST00000316707 HAP1P54257 671 aaPredicted RBP5.94□□□□□ -1.46
PTPN13-201ENST00000316707 RABEP1Q15276 862 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 SMC4Q9NTJ3 1288 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 KLHL34Q8N239 644 aa5.94□□□□□ -1.46
PTPN13-201ENST00000316707 NEUROD2Q15784 382 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 K7ELQ4 463 aaPredicted RBP5.93□□□□□ -1.46
PTPN13-201ENST00000316707 FBLN2P98095 1184 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 CWC22Q9HCG8 908 aaKnown RBP5.93□□□□□ -1.46
PTPN13-201ENST00000316707 ITPRIPQ8IWB1 547 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 SYNMO15061 1565 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 ADGRL1O94910 1474 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 RLBP1P12271 317 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 ZNF445P59923 1031 aa5.93□□□□□ -1.46
PTPN13-201ENST00000316707 PLXNC1O60486 1568 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 MBD3O95983 291 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 U2AF1L5P0DN76 240 aaPredicted RBP5.92□□□□□ -1.46
PTPN13-201ENST00000316707 U2AF1Q01081 240 aaKnown RBP eCLIP5.92□□□□□ -1.46
PTPN13-201ENST00000316707 ALDH1L2Q3SY69 923 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 ZNF500O60304 480 aaPredicted RBP5.92□□□□□ -1.46
PTPN13-201ENST00000316707 ARHGAP45Q92619 1136 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 NOL7Q9UMY1 257 aaKnown RBP5.92□□□□□ -1.46
PTPN13-201ENST00000316707 DMRT2Q9Y5R5 561 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 HMGN5P82970 282 aaKnown RBP5.92□□□□□ -1.46
PTPN13-201ENST00000316707 SPRYD3Q8NCJ5 442 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 ERCC6Q03468 1493 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 DUOX2Q9NRD8 1548 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 PTPRTO14522 1441 aa5.92□□□□□ -1.46
PTPN13-201ENST00000316707 DYNC1I1O14576 645 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 CDC45O75419 566 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 TRPM1Q7Z4N2 1603 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 TNNT2P45379 298 aaPredicted RBP5.91□□□□□ -1.46
PTPN13-201ENST00000316707 CCDC39Q9UFE4 941 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 SYAP1Q96A49 352 aaPredicted RBP5.91□□□□□ -1.46
PTPN13-201ENST00000316707 SPAG9O60271 1321 aaKnown RBP5.91□□□□□ -1.46
PTPN13-201ENST00000316707 NUCB1Q02818 461 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 PDLIM2Q96JY6 352 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 ZBTB40Q9NUA8 1239 aa5.91□□□□□ -1.46
PTPN13-201ENST00000316707 BRPF1P55201 1214 aaPredicted RBP5.9□□□□□ -1.46
PTPN13-201ENST00000316707 RTEL1-TNFRSF6BF6WH68 1400 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 TRIM27P14373 513 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 CASC1Q6TDU7 716 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 CHD1LQ86WJ1 897 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 CARD14Q9BXL6 1004 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 ZKSCAN5Q9Y2L8 839 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 FAM184AQ8NB25 1140 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 BCL2L13Q9BXK5 485 aa5.9□□□□□ -1.46
PTPN13-201ENST00000316707 MAST1Q9Y2H9 1570 aa5.9□□□□□ -1.47
PTPN13-201ENST00000316707 ST18O60284 1047 aa5.9□□□□□ -1.47
PTPN13-201ENST00000316707 MTHFSP49914 203 aa5.9□□□□□ -1.47
PTPN13-201ENST00000316707 GAS2L3Q86XJ1 694 aa5.9□□□□□ -1.47
PTPN13-201ENST00000316707 RPGRIP1LQ68CZ1 1315 aa5.9□□□□□ -1.47
PTPN13-201ENST00000316707 BAG4O95429 457 aaKnown RBP5.89□□□□□ -1.47
PTPN13-201ENST00000316707 CFAP70Q5T0N1 1121 aa5.89□□□□□ -1.47
PTPN13-201ENST00000316707 RRP7AQ9Y3A4 280 aaKnown RBP5.89□□□□□ -1.47
PTPN13-201ENST00000316707 ABCA8O94911 1581 aa5.89□□□□□ -1.47
PTPN13-201ENST00000316707 EXOSC9Q06265 439 aaKnown RBP5.89□□□□□ -1.47
PTPN13-201ENST00000316707 SSH1Q8WYL5 1049 aa5.89□□□□□ -1.47
PTPN13-201ENST00000316707 API5Q9BZZ5 524 aaKnown RBP5.89□□□□□ -1.47
PTPN13-201ENST00000316707 SMAP1Q8IYB5 467 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms