RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 SLC26A8Q96RN1 970 aa16.04■□□□□ 0.16
TRIM56-201ENST00000306085 FOXD1Q16676 465 aa16.04■□□□□ 0.16
TRIM56-201ENST00000306085 NGDNQ8NEJ9 315 aaKnown RBP16.04■□□□□ 0.16
TRIM56-201ENST00000306085 C1orf141Q5JVX7 400 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 TERF2IPQ9NYB0 399 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 EIF4G1Q04637 1599 aaKnown RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 EIF3JO75822 258 aaKnown RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 ZNHIT6Q9NWK9 470 aaKnown RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 CHMP5Q9NZZ3 219 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 ELL2O00472 640 aaPredicted RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 NECTIN2Q92692 538 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 FAM177A1Q8N128 213 aaPredicted RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 KLHL34Q8N239 644 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 KINO60870 393 aaKnown RBP16.03■□□□□ 0.16
TRIM56-201ENST00000306085 CCDC27Q2M243 656 aa16.03■□□□□ 0.16
TRIM56-201ENST00000306085 RALYLQ86SE5 291 aaKnown RBP16.02■□□□□ 0.16
TRIM56-201ENST00000306085 KRT18P05783 430 aaKnown RBP16.02■□□□□ 0.16
TRIM56-201ENST00000306085 RSPH4AQ5TD94 716 aa16.02■□□□□ 0.16
TRIM56-201ENST00000306085 HSP90AB4PQ58FF6 505 aa16.02■□□□□ 0.15
TRIM56-201ENST00000306085 NUCB2P80303 420 aa16.02■□□□□ 0.15
TRIM56-201ENST00000306085 LRRFIP2Q9Y608 721 aaKnown RBP16.01■□□□□ 0.15
TRIM56-201ENST00000306085 XBP1P17861 261 aa16.01■□□□□ 0.15
TRIM56-201ENST00000306085 CCDC91Q7Z6B0 441 aa16.01■□□□□ 0.15
TRIM56-201ENST00000306085 PPM1FP49593 454 aaPredicted RBP16.01■□□□□ 0.15
TRIM56-201ENST00000306085 EIF2S2P20042 333 aaKnown RBP16■□□□□ 0.15
TRIM56-201ENST00000306085 PDCL3Q9H2J4 239 aa16■□□□□ 0.15
TRIM56-201ENST00000306085 CCDC102AQ96A19 550 aa16■□□□□ 0.15
TRIM56-201ENST00000306085 CAVIN1Q6NZI2 390 aaKnown RBP15.99■□□□□ 0.15
TRIM56-201ENST00000306085 CFAP45Q9UL16 551 aa15.99■□□□□ 0.15
TRIM56-201ENST00000306085 ERLIN1O75477 346 aa15.99■□□□□ 0.15
TRIM56-201ENST00000306085 NEBLO76041 1014 aa15.99■□□□□ 0.15
TRIM56-201ENST00000306085 PUS7Q96PZ0 661 aaKnown RBP15.99■□□□□ 0.15
TRIM56-201ENST00000306085 TSPY26PQ9H489 355 aa15.99■□□□□ 0.15
TRIM56-201ENST00000306085 LUC7LQ9NQ29 371 aaKnown RBP15.99■□□□□ 0.15
TRIM56-201ENST00000306085 TTC5Q8N0Z6 440 aa15.98■□□□□ 0.15
TRIM56-201ENST00000306085 GPATCH11Q8N954 259 aa15.98■□□□□ 0.15
TRIM56-201ENST00000306085 SYTL4Q96C24 671 aaPredicted RBP15.98■□□□□ 0.15
TRIM56-201ENST00000306085 NUTM2FA1L443 756 aa15.98■□□□□ 0.15
TRIM56-201ENST00000306085 TXLNAP40222 546 aa15.98■□□□□ 0.15
TRIM56-201ENST00000306085 DNAJC2Q99543 621 aaKnown RBP15.98■□□□□ 0.15
TRIM56-201ENST00000306085 GGT6Q6P531 493 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 STAMBPO95630 424 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 EVA1CP58658 441 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 IQCEQ6IPM2 695 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 ATP2B1P20020 1258 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 DDX23Q9BUQ8 820 aaKnown RBP15.97■□□□□ 0.15
TRIM56-201ENST00000306085 PHLDB1Q86UU1 1377 aa15.97■□□□□ 0.15
TRIM56-201ENST00000306085 MAP2K1Q02750 393 aaPredicted RBP15.97■□□□□ 0.15
TRIM56-201ENST00000306085 G3BP1Q13283 466 aaKnown RBP eCLIP15.96■□□□□ 0.15
TRIM56-201ENST00000306085 SPATA24Q86W54 205 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 LETM1O95202 739 aaPredicted RBP15.96■□□□□ 0.15
TRIM56-201ENST00000306085 SERPINC1P01008 464 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 INTS3Q68E01 1043 aaKnown RBP15.96■□□□□ 0.15
TRIM56-201ENST00000306085 PPFIBP1Q86W92 1011 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 CRBNQ96SW2 442 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 UQCRHLA0A096LP55 91 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 UQCRHP07919 91 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 MRE11P49959 708 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 ZKSCAN2Q63HK3 967 aa15.96■□□□□ 0.15
TRIM56-201ENST00000306085 ZNF526Q8TF50 670 aaPredicted RBP15.96■□□□□ 0.15
TRIM56-201ENST00000306085 IPO4Q8TEX9 1081 aaKnown RBP15.96■□□□□ 0.14
TRIM56-201ENST00000306085 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.95■□□□□ 0.14
TRIM56-201ENST00000306085 CEBPZQ03701 1054 aaKnown RBP15.95■□□□□ 0.14
TRIM56-201ENST00000306085 PPM1EQ8WY54 764 aa15.95■□□□□ 0.14
TRIM56-201ENST00000306085 WASHC4Q2M389 1173 aa15.94■□□□□ 0.14
TRIM56-201ENST00000306085 TANGO6Q9C0B7 1094 aa15.94■□□□□ 0.14
TRIM56-201ENST00000306085 EEA1Q15075 1411 aa15.94■□□□□ 0.14
TRIM56-201ENST00000306085 SSR1P43307 286 aaKnown RBP15.94■□□□□ 0.14
TRIM56-201ENST00000306085 CCDC113Q9H0I3 377 aa15.94■□□□□ 0.14
TRIM56-201ENST00000306085 COG6Q9Y2V7 657 aa15.94■□□□□ 0.14
TRIM56-201ENST00000306085 NUTM2DQ5VT03 806 aaPredicted RBP15.93■□□□□ 0.14
TRIM56-201ENST00000306085 ROCK1Q13464 1354 aa15.93■□□□□ 0.14
TRIM56-201ENST00000306085 TXLNBQ8N3L3 684 aa15.93■□□□□ 0.14
TRIM56-201ENST00000306085 ZHX3Q9H4I2 956 aa15.93■□□□□ 0.14
TRIM56-201ENST00000306085 NINLQ9Y2I6 1382 aa15.93■□□□□ 0.14
TRIM56-201ENST00000306085 PKD2Q13563 968 aa15.93■□□□□ 0.14
TRIM56-201ENST00000306085 RRP9O43818 475 aaKnown RBP15.92■□□□□ 0.14
TRIM56-201ENST00000306085 TMCO3Q6UWJ1 677 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 KIF7Q2M1P5 1343 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 KIF3BO15066 747 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 TEFQ10587 303 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 BRPF3Q9ULD4 1205 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 PDE3BQ13370 1112 aa15.92■□□□□ 0.14
TRIM56-201ENST00000306085 MPNDQ8N594 471 aa15.91■□□□□ 0.14
TRIM56-201ENST00000306085 ERC2O15083 957 aa15.91■□□□□ 0.14
TRIM56-201ENST00000306085 ANAPC15P60006 121 aa15.91■□□□□ 0.14
TRIM56-201ENST00000306085 STIM1Q13586 685 aa15.91■□□□□ 0.14
TRIM56-201ENST00000306085 FANCIQ9NVI1 1328 aa15.91■□□□□ 0.14
TRIM56-201ENST00000306085 MATR3P43243 847 aaKnown RBP eCLIP15.91■□□□□ 0.14
TRIM56-201ENST00000306085 CFAP57Q96MR6 1250 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 TNNT1P13805 278 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 NEUROD6Q96NK8 337 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 PIP4K2AP48426 406 aaPredicted RBP15.9■□□□□ 0.14
TRIM56-201ENST00000306085 BAZ1BQ9UIG0 1483 aaKnown RBP15.9■□□□□ 0.14
TRIM56-201ENST00000306085 UBE4AQ14139 1066 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 SART3Q15020 963 aaKnown RBP15.9■□□□□ 0.14
TRIM56-201ENST00000306085 DDX11Q96FC9 970 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 EXOC6Q8TAG9 804 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 C22orf23Q9BZE7 217 aa15.9■□□□□ 0.14
TRIM56-201ENST00000306085 SHTN1A0MZ66 631 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 142.4 ms