RNA–Protein interactions for RNA: ENST00000264039.6

GPC1-201, Transcript of glypican 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC1, Length 3,713 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-201ENST00000264039 PDE4CQ08493 712 aa19.97■□□□□ 0.79
GPC1-201ENST00000264039 KLHL40Q2TBA0 621 aa19.97■□□□□ 0.79
GPC1-201ENST00000264039 CHD1LQ86WJ1 897 aa19.97■□□□□ 0.79
GPC1-201ENST00000264039 SYAP1Q96A49 352 aaPredicted RBP19.97■□□□□ 0.79
GPC1-201ENST00000264039 CFAP43Q8NDM7 1665 aa19.97■□□□□ 0.79
GPC1-201ENST00000264039 RAB3GAP1Q15042 981 aa19.96■□□□□ 0.79
GPC1-201ENST00000264039 SSH1Q8WYL5 1049 aa19.96■□□□□ 0.79
GPC1-201ENST00000264039 TRIM27P14373 513 aa19.95■□□□□ 0.78
GPC1-201ENST00000264039 KIF16BQ96L93 1317 aa19.95■□□□□ 0.78
GPC1-201ENST00000264039 VGLL3A8MV65 326 aa19.94■□□□□ 0.78
GPC1-201ENST00000264039 SLC12A5Q9H2X9 1139 aa19.94■□□□□ 0.78
GPC1-201ENST00000264039 DYNC1I1O14576 645 aa19.94■□□□□ 0.78
GPC1-201ENST00000264039 ATF7IPQ6VMQ6 1270 aa19.94■□□□□ 0.78
GPC1-201ENST00000264039 ZKSCAN5Q9Y2L8 839 aa19.94■□□□□ 0.78
GPC1-201ENST00000264039 NPHP1O15259 732 aa19.93■□□□□ 0.78
GPC1-201ENST00000264039 CD2BP2O95400 341 aaKnown RBP19.93■□□□□ 0.78
GPC1-201ENST00000264039 PLCD3Q8N3E9 789 aa19.93■□□□□ 0.78
GPC1-201ENST00000264039 TRERF1Q96PN7 1200 aa19.93■□□□□ 0.78
GPC1-201ENST00000264039 ROCK1Q13464 1354 aa19.93■□□□□ 0.78
GPC1-201ENST00000264039 TTC12Q9H892 705 aaPredicted RBP19.93■□□□□ 0.78
GPC1-201ENST00000264039 USP25Q9UHP3 1055 aa19.93■□□□□ 0.78
GPC1-201ENST00000264039 EPRSP07814 1512 aaKnown RBP19.93■□□□□ 0.78
GPC1-201ENST00000264039 NEK4P51957 841 aa19.92■□□□□ 0.78
GPC1-201ENST00000264039 CFAP70Q5T0N1 1121 aa19.92■□□□□ 0.78
GPC1-201ENST00000264039 KIF3AQ9Y496 699 aa19.92■□□□□ 0.78
GPC1-201ENST00000264039 TRIM6-TRIM34B2RNG4 842 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 AAMPQ13685 434 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 TBC1D9Q6ZT07 1266 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 PDCL2Q8N4E4 241 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 STK26Q9P289 416 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 PLEKHH2Q8IVE3 1493 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 CDC45O75419 566 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 TSPY26PQ9H489 355 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 BCORL1Q5H9F3 1711 aa19.91■□□□□ 0.78
GPC1-201ENST00000264039 PKP1Q13835 747 aa19.9■□□□□ 0.78
GPC1-201ENST00000264039 SNAPC4Q5SXM2 1469 aa19.89■□□□□ 0.78
GPC1-201ENST00000264039 SRPK2P78362 688 aaKnown RBP19.89■□□□□ 0.77
GPC1-201ENST00000264039 SMC5Q8IY18 1101 aa19.89■□□□□ 0.77
GPC1-201ENST00000264039 ZGPATQ8N5A5 531 aaKnown RBP19.89■□□□□ 0.77
GPC1-201ENST00000264039 ERICH4A6NGS2 130 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 TAOK2Q9UL54 1235 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 CCDC27Q2M243 656 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 NOL7Q9UMY1 257 aaKnown RBP19.88■□□□□ 0.77
GPC1-201ENST00000264039 UGGT2Q9NYU1 1516 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 RALGAPBQ86X10 1494 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 RILPL2Q969X0 211 aa19.88■□□□□ 0.77
GPC1-201ENST00000264039 GAPVD1Q14C86 1478 aa19.87■□□□□ 0.77
GPC1-201ENST00000264039 SMAP1Q8IYB5 467 aaPredicted RBP19.87■□□□□ 0.77
GPC1-201ENST00000264039 SLC4A10Q6U841 1118 aa19.87■□□□□ 0.77
GPC1-201ENST00000264039 HMGN5P82970 282 aaKnown RBP19.86■□□□□ 0.77
GPC1-201ENST00000264039 CCDC94Q9BW85 323 aaPredicted RBP19.86■□□□□ 0.77
GPC1-201ENST00000264039 BLMP54132 1417 aaPredicted RBP19.86■□□□□ 0.77
GPC1-201ENST00000264039 ZMYM4Q5VZL5 1548 aa19.86■□□□□ 0.77
GPC1-201ENST00000264039 GOLGA6L4A6NEF3 574 aa19.86■□□□□ 0.77
GPC1-201ENST00000264039 IFT57Q9NWB7 429 aa19.86■□□□□ 0.77
GPC1-201ENST00000264039 TNNT3P45378 269 aaPredicted RBP19.85■□□□□ 0.77
GPC1-201ENST00000264039 RABEP1Q15276 862 aa19.85■□□□□ 0.77
GPC1-201ENST00000264039 NGEFQ8N5V2 710 aa19.85■□□□□ 0.77
GPC1-201ENST00000264039 PZPP20742 1482 aa19.84■□□□□ 0.77
GPC1-201ENST00000264039 GGNBP2Q9H3C7 697 aa19.84■□□□□ 0.77
GPC1-201ENST00000264039 CHMP4BQ9H444 224 aaKnown RBP19.84■□□□□ 0.77
GPC1-201ENST00000264039 ANO2Q9NQ90 1003 aa19.84■□□□□ 0.77
GPC1-201ENST00000264039 POLA1P09884 1462 aaPredicted RBP19.84■□□□□ 0.77
GPC1-201ENST00000264039 PHF14O94880 888 aa19.84■□□□□ 0.77
GPC1-201ENST00000264039 HECW1Q76N89 1606 aa19.84■□□□□ 0.77
GPC1-201ENST00000264039 FIBPO43427 364 aa19.83■□□□□ 0.76
GPC1-201ENST00000264039 PPP1R9BQ96SB3 815 aa19.83■□□□□ 0.76
GPC1-201ENST00000264039 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.83■□□□□ 0.76
GPC1-201ENST00000264039 GRIN2BQ13224 1484 aa19.83■□□□□ 0.76
GPC1-201ENST00000264039 THUMPD2Q9BTF0 503 aaKnown RBP19.83■□□□□ 0.76
GPC1-201ENST00000264039 MCCP23508 829 aa19.82■□□□□ 0.76
GPC1-201ENST00000264039 TMEM132EQ6IEE7 984 aa19.82■□□□□ 0.76
GPC1-201ENST00000264039 DTNBO60941 627 aa19.82■□□□□ 0.76
GPC1-201ENST00000264039 PRDM2Q13029 1718 aa19.81■□□□□ 0.76
GPC1-201ENST00000264039 NINLQ9Y2I6 1382 aa19.81■□□□□ 0.76
GPC1-201ENST00000264039 ZNF521Q96K83 1311 aa19.81■□□□□ 0.76
GPC1-201ENST00000264039 WDR63Q8IWG1 891 aa19.81■□□□□ 0.76
GPC1-201ENST00000264039 SNX21Q969T3 373 aa19.81■□□□□ 0.76
GPC1-201ENST00000264039 HMOX1P09601 288 aa19.8■□□□□ 0.76
GPC1-201ENST00000264039 INTS3Q68E01 1043 aaKnown RBP19.8■□□□□ 0.76
GPC1-201ENST00000264039 CHMP4AQ9BY43 222 aa19.8■□□□□ 0.76
GPC1-201ENST00000264039 THOC2Q8NI27 1593 aaKnown RBP19.8■□□□□ 0.76
GPC1-201ENST00000264039 MBD3O95983 291 aa19.8■□□□□ 0.76
GPC1-201ENST00000264039 LARP6Q9BRS8 491 aaKnown RBP19.8■□□□□ 0.76
GPC1-201ENST00000264039 UPF3BQ9BZI7 483 aaKnown RBP19.8■□□□□ 0.76
GPC1-201ENST00000264039 SOX12O15370 315 aa19.8■□□□□ 0.76
GPC1-201ENST00000264039 DIAPH3Q9NSV4 1193 aa19.8■□□□□ 0.76
GPC1-201ENST00000264039 SMARCA5O60264 1052 aaPredicted RBP19.79■□□□□ 0.76
GPC1-201ENST00000264039 U2AF2P26368 475 aaKnown RBP eCLIP19.79■□□□□ 0.76
GPC1-201ENST00000264039 NOLC1Q14978 699 aaKnown RBP eCLIP19.79■□□□□ 0.76
GPC1-201ENST00000264039 MAGI3Q5TCQ9 1506 aa19.79■□□□□ 0.76
GPC1-201ENST00000264039 FGD1P98174 961 aa19.79■□□□□ 0.76
GPC1-201ENST00000264039 C9orf84Q5VXU9 1444 aa19.79■□□□□ 0.76
GPC1-201ENST00000264039 HCLS1P14317 486 aaPredicted RBP19.78■□□□□ 0.76
GPC1-201ENST00000264039 LRSAM1Q6UWE0 723 aa19.78■□□□□ 0.76
GPC1-201ENST00000264039 REC8O95072 547 aa19.78■□□□□ 0.76
GPC1-201ENST00000264039 TMEM63CQ9P1W3 806 aa19.77■□□□□ 0.76
GPC1-201ENST00000264039 C16orf71Q8IYS4 520 aaPredicted RBP19.77■□□□□ 0.76
GPC1-201ENST00000264039 PRDM4Q9UKN5 801 aa19.77■□□□□ 0.76
GPC1-201ENST00000264039 GOLGA6L6A8MZA4 724 aa19.77■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms