RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 UHRF1BP1Q6BDS2 1440 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 KCNH5Q8NCM2 988 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 RALGAPBQ86X10 1494 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 INSRP06213 1382 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 IPO9Q96P70 1041 aaKnown RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 WDR7Q9Y4E6 1490 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 DNMT1P26358 1616 aaKnown RBP5.27□□□□□ -1.57
VPS13C-202ENST00000261517 CCDC30Q5VVM6 783 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 CCDC70Q6NSX1 233 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 RAPGEF4Q8WZA2 1011 aa5.27□□□□□ -1.57
VPS13C-202ENST00000261517 TSR1Q2NL82 804 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 DZIP1LQ8IYY4 767 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 G3V3G9 751 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 EVA1CP58658 441 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 DCAF8Q5TAQ9 597 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 SCAF11Q99590 1463 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 DHX16O60231 1041 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 ANKLE2Q86XL3 938 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 GCC1Q96CN9 775 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 DIAPH3Q9NSV4 1193 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 FANCAO15360 1455 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 RPRD2Q5VT52 1461 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 CCT4P50991 539 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 HIRIP3Q9BW71 556 aaPredicted RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 FANCIQ9NVI1 1328 aa5.26□□□□□ -1.57
VPS13C-202ENST00000261517 SLC3A2P08195 630 aaKnown RBP5.26□□□□□ -1.57
VPS13C-202ENST00000261517 ARHGEF5Q12774 1597 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 PIP4K2AP48426 406 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-202ENST00000261517 TXLNBQ8N3L3 684 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 XBP1P17861 261 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 TRAK1Q9UPV9 953 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 TRDNQ13061 729 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 TTC21BQ7Z4L5 1316 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 SAMD9Q5K651 1589 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 BRMS1Q9HCU9 246 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 TRIM29Q14134 588 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 C9orf78Q9NZ63 289 aaPredicted RBP5.25□□□□□ -1.57
VPS13C-202ENST00000261517 ABCC2Q92887 1545 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 CCP110O43303 1012 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 NBR1Q14596 966 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 PLCH2O75038 1416 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 KAT6BQ8WYB5 2073 aa5.25□□□□□ -1.57
VPS13C-202ENST00000261517 G3BP1Q13283 466 aaKnown RBP eCLIP5.25□□□□□ -1.574e-6■■■□□ 18.1
VPS13C-202ENST00000261517 ANKRD1Q15327 319 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 GNL3LQ9NVN8 582 aaKnown RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 DRC7Q8IY82 874 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 EIF4G3O43432 1585 aaKnown RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 FCHSD2O94868 740 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 KIF1BO60333 1816 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 KDM5BQ9UGL1 1544 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 TRIM6-TRIM34B2RNG4 842 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 NCBP3Q53F19 620 aaKnown RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 SPG7Q9UQ90 795 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 GTF2E1P29083 439 aaPredicted RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 SART3Q15020 963 aaKnown RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 GOLGA6L3A6NEY3 463 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 MTERF4Q7Z6M4 381 aaKnown RBP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 PLXNC1O60486 1568 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 PLEKHH1Q9ULM0 1364 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 ERICH2A1L162 156 aa5.24□□□□□ -1.57
VPS13C-202ENST00000261517 SAFBQ15424 915 aaKnown RBP eCLIP5.24□□□□□ -1.57
VPS13C-202ENST00000261517 NAT10Q9H0A0 1025 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 NAP1L2Q9ULW6 460 aaPredicted RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 ABCC5O15440 1437 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 AMOTQ4VCS5 1084 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 ZSCAN25Q6NSZ9 544 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 RDXP35241 583 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 DHX37Q8IY37 1157 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 IL16Q14005 1332 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 IFIT2P09913 472 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 CYB5RLQ6IPT4 315 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 GPS2Q13227 327 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 SHROOM2Q13796 1616 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 ADGRL2O95490 1459 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 CWC22Q9HCG8 908 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 CDK13Q14004 1512 aaKnown RBP5.23□□□□□ -1.57
VPS13C-202ENST00000261517 NEO1Q92859 1461 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 PPIP5K1Q6PFW1 1433 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 H3BQV1 296 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 IFFO2Q5TF58 517 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 CNTROBQ8N137 903 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 TRIM34Q9BYJ4 488 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 ARHGEF11O15085 1522 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 MAST1Q9Y2H9 1570 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 FAM184AQ8NB25 1140 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 CEP89Q96ST8 783 aa5.23□□□□□ -1.57
VPS13C-202ENST00000261517 ALDH1L2Q3SY69 923 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 TCEAL9Q9UHQ7 104 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 IPO7O95373 1038 aaKnown RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 RIPK4P57078 832 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 ZFYVE9O95405 1425 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 SAFB2Q14151 953 aaKnown RBP eCLIP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 UHRF1BP1LA0JNW5 1464 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 GPATCH8Q9UKJ3 1502 aaKnown RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 C11orf95C9JLR9 678 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 KIF6Q6ZMV9 814 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 A0A0U1RQG5 324 aaPredicted RBP5.22□□□□□ -1.57
VPS13C-202ENST00000261517 PPP4R3BQ5MIZ7 849 aa5.22□□□□□ -1.57
VPS13C-202ENST00000261517 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.22□□□□□ -1.571e-6■■■□□ 18.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms