RNA–Protein interactions for RNA: ENST00000238379.9

HDHD3-201, Transcript of haloacid dehalogenase like hydrolase domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDHD3, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDHD3-201ENST00000238379 SIRT1Q96EB6 747 aa20.75■□□□□ 0.91
HDHD3-201ENST00000238379 KNSTRNQ9Y448 316 aa20.75■□□□□ 0.91
HDHD3-201ENST00000238379 KNDC1Q76NI1 1749 aa20.74■□□□□ 0.91
HDHD3-201ENST00000238379 PLEKHH1Q9ULM0 1364 aa20.74■□□□□ 0.91
HDHD3-201ENST00000238379 AMER1Q5JTC6 1135 aaPredicted RBP20.74■□□□□ 0.91
HDHD3-201ENST00000238379 MYBBP1AQ9BQG0 1328 aaKnown RBP20.73■□□□□ 0.91
HDHD3-201ENST00000238379 SLC26A8Q96RN1 970 aa20.73■□□□□ 0.91
HDHD3-201ENST00000238379 SLC12A5Q9H2X9 1139 aa20.73■□□□□ 0.91
HDHD3-201ENST00000238379 CABP2Q9NPB3 220 aa20.73■□□□□ 0.91
HDHD3-201ENST00000238379 FAM135BQ49AJ0 1406 aa20.73■□□□□ 0.91
HDHD3-201ENST00000238379 CC2D1BQ5T0F9 858 aaKnown RBP20.72■□□□□ 0.91
HDHD3-201ENST00000238379 CARD14Q9BXL6 1004 aa20.72■□□□□ 0.91
HDHD3-201ENST00000238379 TBX22Q9Y458 520 aa20.72■□□□□ 0.91
HDHD3-201ENST00000238379 CPS1P31327 1500 aa20.72■□□□□ 0.91
HDHD3-201ENST00000238379 TMC1Q8TDI8 760 aa20.71■□□□□ 0.91
HDHD3-201ENST00000238379 NPC1L1Q9UHC9 1359 aa20.7■□□□□ 0.9
HDHD3-201ENST00000238379 SRPK2P78362 688 aaKnown RBP20.69■□□□□ 0.9
HDHD3-201ENST00000238379 CDK19Q9BWU1 502 aa20.68■□□□□ 0.9
HDHD3-201ENST00000238379 BRD4O60885 1362 aaPredicted RBP20.68■□□□□ 0.9
HDHD3-201ENST00000238379 PTPRUQ92729 1446 aa20.68■□□□□ 0.9
HDHD3-201ENST00000238379 DIP2AQ14689 1571 aa20.68■□□□□ 0.9
HDHD3-201ENST00000238379 ROBO2Q9HCK4 1378 aa20.67■□□□□ 0.9
HDHD3-201ENST00000238379 ATAD2Q6PL18 1390 aa20.67■□□□□ 0.9
HDHD3-201ENST00000238379 ANKLE2Q86XL3 938 aa20.67■□□□□ 0.9
HDHD3-201ENST00000238379 NINLQ9Y2I6 1382 aa20.67■□□□□ 0.9
HDHD3-201ENST00000238379 NLRP13Q86W25 1043 aa20.66■□□□□ 0.9
HDHD3-201ENST00000238379 FAM9BQ8IZU0 186 aa20.64■□□□□ 0.9
HDHD3-201ENST00000238379 ANKRD36BQ8N2N9 1353 aa20.64■□□□□ 0.89
HDHD3-201ENST00000238379 PNISRQ8TF01 805 aaKnown RBP20.63■□□□□ 0.89
HDHD3-201ENST00000238379 AMOTL2Q9Y2J4 779 aa20.63■□□□□ 0.89
HDHD3-201ENST00000238379 NSD3Q9BZ95 1437 aa20.63■□□□□ 0.89
HDHD3-201ENST00000238379 WASLO00401 505 aaPredicted RBP20.62■□□□□ 0.89
HDHD3-201ENST00000238379 PIK3R4Q99570 1358 aa20.61■□□□□ 0.89
HDHD3-201ENST00000238379 PTCH1Q13635 1447 aa20.59■□□□□ 0.89
HDHD3-201ENST00000238379 USP32Q8NFA0 1604 aa20.58■□□□□ 0.89
HDHD3-201ENST00000238379 PPP2R1AP30153 589 aa20.58■□□□□ 0.89
HDHD3-201ENST00000238379 A0A1W2PP64 1363 aa20.58■□□□□ 0.89
HDHD3-201ENST00000238379 CD163L1Q9NR16 1453 aa20.58■□□□□ 0.89
HDHD3-201ENST00000238379 HNRNPUQ00839 825 aaKnown RBP eCLIP20.57■□□□□ 0.88
HDHD3-201ENST00000238379 XRN1Q8IZH2 1706 aaKnown RBP20.57■□□□□ 0.88
HDHD3-201ENST00000238379 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.57■□□□□ 0.88
HDHD3-201ENST00000238379 TERF2IPQ9NYB0 399 aa20.57■□□□□ 0.88
HDHD3-201ENST00000238379 CABP1Q9NZU7 370 aa20.57■□□□□ 0.88
HDHD3-201ENST00000238379 ADGRB2O60241 1585 aa20.56■□□□□ 0.88
HDHD3-201ENST00000238379 CGNL1Q0VF96 1302 aa20.55■□□□□ 0.88
HDHD3-201ENST00000238379 NPHP4O75161 1426 aaPredicted RBP20.53■□□□□ 0.88
HDHD3-201ENST00000238379 KCNA6P17658 529 aa20.53■□□□□ 0.88
HDHD3-201ENST00000238379 NUDT16Q96DE0 195 aaKnown RBP20.53■□□□□ 0.88
HDHD3-201ENST00000238379 ATP7BP35670 1465 aa20.52■□□□□ 0.88
HDHD3-201ENST00000238379 KDM4FA0A1W2PPD8 638 aa20.52■□□□□ 0.88
HDHD3-201ENST00000238379 HDGFL2Q7Z4V5 671 aaPredicted RBP20.51■□□□□ 0.87
HDHD3-201ENST00000238379 CCDC61Q9Y6R9 512 aa20.51■□□□□ 0.87
HDHD3-201ENST00000238379 NSD2O96028 1365 aa20.51■□□□□ 0.87
HDHD3-201ENST00000238379 PRR36Q9H6K5 1346 aa20.5■□□□□ 0.87
HDHD3-201ENST00000238379 PPIP5K1Q6PFW1 1433 aa20.5■□□□□ 0.87
HDHD3-201ENST00000238379 MORC1Q86VD1 984 aa20.5■□□□□ 0.87
HDHD3-201ENST00000238379 NCKAP5LQ9HCH0 1330 aa20.5■□□□□ 0.87
HDHD3-201ENST00000238379 CHD2O14647 1828 aaKnown RBP20.49■□□□□ 0.87
HDHD3-201ENST00000238379 CPSF1Q10570 1443 aaKnown RBP20.48■□□□□ 0.87
HDHD3-201ENST00000238379 FYB1O15117 783 aa20.45■□□□□ 0.86
HDHD3-201ENST00000238379 CDC42BPGQ6DT37 1551 aa20.44■□□□□ 0.86
HDHD3-201ENST00000238379 ZBED9Q6R2W3 1325 aa20.44■□□□□ 0.86
HDHD3-201ENST00000238379 INSRP06213 1382 aa20.43■□□□□ 0.86
HDHD3-201ENST00000238379 TOPAZ1Q8N9V7 1692 aa20.43■□□□□ 0.86
HDHD3-201ENST00000238379 GGNBP2Q9H3C7 697 aa20.42■□□□□ 0.86
HDHD3-201ENST00000238379 EDC4Q6P2E9 1401 aaKnown RBP20.41■□□□□ 0.86
HDHD3-201ENST00000238379 PLEKHG3A1L390 1219 aa20.41■□□□□ 0.86
HDHD3-201ENST00000238379 NUTM2FA1L443 756 aa20.41■□□□□ 0.86
HDHD3-201ENST00000238379 TNNT2P45379 298 aaPredicted RBP20.41■□□□□ 0.86
HDHD3-201ENST00000238379 SCAF1Q9H7N4 1312 aaKnown RBP20.4■□□□□ 0.86
HDHD3-201ENST00000238379 ZNF692Q9BU19 519 aaPredicted RBP20.4■□□□□ 0.86
HDHD3-201ENST00000238379 POLR3AO14802 1390 aaPredicted RBP20.4■□□□□ 0.86
HDHD3-201ENST00000238379 ANKRD26Q9UPS8 1709 aa20.39■□□□□ 0.85
HDHD3-201ENST00000238379 MON2Q7Z3U7 1717 aa20.39■□□□□ 0.85
HDHD3-201ENST00000238379 ADAMTS8Q9UP79 889 aa20.39■□□□□ 0.85
HDHD3-201ENST00000238379 AKAP12Q02952 1782 aa20.38■□□□□ 0.85
HDHD3-201ENST00000238379 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.38■□□□□ 0.85
HDHD3-201ENST00000238379 GTF3C3Q9Y5Q9 886 aa20.38■□□□□ 0.85
HDHD3-201ENST00000238379 BLMP54132 1417 aaPredicted RBP20.38■□□□□ 0.85
HDHD3-201ENST00000238379 NWD1Q149M9 1564 aa20.38■□□□□ 0.85
HDHD3-201ENST00000238379 KIF20BQ96Q89 1820 aa20.37■□□□□ 0.85
HDHD3-201ENST00000238379 HSPA2P54652 639 aa20.37■□□□□ 0.85
HDHD3-201ENST00000238379 NKTRP30414 1462 aaKnown RBP20.37■□□□□ 0.85
HDHD3-201ENST00000238379 ITSN1Q15811 1721 aa20.37■□□□□ 0.85
HDHD3-201ENST00000238379 ACEP12821 1306 aa20.36■□□□□ 0.85
HDHD3-201ENST00000238379 ANKARQ7Z5J8 1434 aa20.36■□□□□ 0.85
HDHD3-201ENST00000238379 MTHFSP49914 203 aa20.36■□□□□ 0.85
HDHD3-201ENST00000238379 WDR43Q15061 677 aaKnown RBP eCLIP20.36■□□□□ 0.85
HDHD3-201ENST00000238379 LMTK3Q96Q04 1460 aa20.36■□□□□ 0.85
HDHD3-201ENST00000238379 NALCNQ8IZF0 1738 aa20.36■□□□□ 0.85
HDHD3-201ENST00000238379 FMN2Q9NZ56 1722 aa20.35■□□□□ 0.85
HDHD3-201ENST00000238379 RBM33Q96EV2 1170 aaKnown RBP20.34■□□□□ 0.85
HDHD3-201ENST00000238379 ADGRL3Q9HAR2 1447 aa20.33■□□□□ 0.85
HDHD3-201ENST00000238379 NME9Q86XW9 330 aa20.32■□□□□ 0.84
HDHD3-201ENST00000238379 USP6P35125 1406 aa20.32■□□□□ 0.84
HDHD3-201ENST00000238379 RGPD8O14715 1765 aaPredicted RBP20.32■□□□□ 0.84
HDHD3-201ENST00000238379 SENP3-EIF4A1A0A087X0R7 540 aa20.32■□□□□ 0.84
HDHD3-201ENST00000238379 NRKQ7Z2Y5 1582 aa20.3■□□□□ 0.84
HDHD3-201ENST00000238379 PMFBP1Q8TBY8 1022 aa20.3■□□□□ 0.84
HDHD3-201ENST00000238379 SSH2Q76I76 1423 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms