RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 WASHC4Q2M389 1173 aa23.06■■□□□ 1.28
SMPD3-201ENST00000219334 RALYLQ86SE5 291 aaKnown RBP23.06■■□□□ 1.28
SMPD3-201ENST00000219334 GRIN2BQ13224 1484 aa23.06■■□□□ 1.28
SMPD3-201ENST00000219334 RBM42Q9BTD8 480 aaKnown RBP23.05■■□□□ 1.28
SMPD3-201ENST00000219334 ANO8Q9HCE9 1232 aaPredicted RBP23.05■■□□□ 1.28
SMPD3-201ENST00000219334 PRDM2Q13029 1718 aa23.05■■□□□ 1.28
SMPD3-201ENST00000219334 ANKRD20A12PQ8NF67 263 aa23.05■■□□□ 1.28
SMPD3-201ENST00000219334 SYNJ2O15056 1496 aa23.04■■□□□ 1.28
SMPD3-201ENST00000219334 SAFBQ15424 915 aaKnown RBP eCLIP23.03■■□□□ 1.28
SMPD3-201ENST00000219334 PRG4Q92954 1404 aaPredicted RBP23.03■■□□□ 1.28
SMPD3-201ENST00000219334 CNKSR2Q8WXI2 1034 aa23.03■■□□□ 1.28
SMPD3-201ENST00000219334 HOOK1Q9UJC3 728 aaKnown RBP23.03■■□□□ 1.28
SMPD3-201ENST00000219334 KIF6Q6ZMV9 814 aa23.03■■□□□ 1.28
SMPD3-201ENST00000219334 PCMTD1Q96MG8 357 aaPredicted RBP23.03■■□□□ 1.28
SMPD3-201ENST00000219334 RRBP1Q9P2E9 1410 aaKnown RBP23.03■■□□□ 1.28
SMPD3-201ENST00000219334 FYB1O15117 783 aa23.02■■□□□ 1.28
SMPD3-201ENST00000219334 CFAP70Q5T0N1 1121 aa23.02■■□□□ 1.28
SMPD3-201ENST00000219334 FYCO1Q9BQS8 1478 aa23.02■■□□□ 1.28
SMPD3-201ENST00000219334 TATP17735 454 aaPredicted RBP23.02■■□□□ 1.28
SMPD3-201ENST00000219334 FAM177BA6PVY3 158 aa23.02■■□□□ 1.28
SMPD3-201ENST00000219334 PDE4AP27815 886 aa23.02■■□□□ 1.28
SMPD3-201ENST00000219334 IPO7O95373 1038 aaKnown RBP23.01■■□□□ 1.27
SMPD3-201ENST00000219334 INTS3Q68E01 1043 aaKnown RBP23.01■■□□□ 1.27
SMPD3-201ENST00000219334 SKOR2Q2VWA4 1001 aaPredicted RBP23■■□□□ 1.27
SMPD3-201ENST00000219334 CCDC30Q5VVM6 783 aa23■■□□□ 1.27
SMPD3-201ENST00000219334 SMG6Q86US8 1419 aaKnown RBP23■■□□□ 1.27
SMPD3-201ENST00000219334 MTHFSP49914 203 aa23■■□□□ 1.27
SMPD3-201ENST00000219334 PRAM1Q96QH2 718 aa22.99■■□□□ 1.27
SMPD3-201ENST00000219334 NUTM2BA6NNL0 878 aaPredicted RBP22.98■■□□□ 1.27
SMPD3-201ENST00000219334 NUTM2EB1AL46 878 aaPredicted RBP22.98■■□□□ 1.27
SMPD3-201ENST00000219334 NUTM2AQ8IVF1 878 aaPredicted RBP22.98■■□□□ 1.27
SMPD3-201ENST00000219334 TBC1D2BQ9UPU7 963 aa22.98■■□□□ 1.27
SMPD3-201ENST00000219334 NCAPD3P42695 1498 aa22.98■■□□□ 1.27
SMPD3-201ENST00000219334 ANKLE2Q86XL3 938 aa22.97■■□□□ 1.27
SMPD3-201ENST00000219334 BICD2Q8TD16 824 aa22.97■■□□□ 1.27
SMPD3-201ENST00000219334 KRI1Q8N9T8 703 aaKnown RBP22.97■■□□□ 1.27
SMPD3-201ENST00000219334 GNAI3P08754 354 aa22.96■■□□□ 1.27
SMPD3-201ENST00000219334 SMC3Q9UQE7 1217 aa22.96■■□□□ 1.27
SMPD3-201ENST00000219334 TOM1L2Q6ZVM7 507 aa22.95■■□□□ 1.27
SMPD3-201ENST00000219334 PPP1R1BQ9UD71 204 aaPredicted RBP22.95■■□□□ 1.27
SMPD3-201ENST00000219334 IKQ13123 557 aaPredicted RBP22.95■■□□□ 1.26
SMPD3-201ENST00000219334 KIF7Q2M1P5 1343 aa22.95■■□□□ 1.26
SMPD3-201ENST00000219334 CLASRPQ8N2M8 674 aaKnown RBP22.95■■□□□ 1.26
SMPD3-201ENST00000219334 VPS37CA5D8V6 355 aaPredicted RBP22.95■■□□□ 1.26
SMPD3-201ENST00000219334 LNPKQ9C0E8 428 aa22.95■■□□□ 1.26
SMPD3-201ENST00000219334 ARID3AQ99856 593 aa22.94■■□□□ 1.26
SMPD3-201ENST00000219334 ZNF692Q9BU19 519 aaPredicted RBP22.94■■□□□ 1.26
SMPD3-201ENST00000219334 SLC52A1Q9NWF4 448 aa22.94■■□□□ 1.26
SMPD3-201ENST00000219334 BRMS1Q9HCU9 246 aa22.94■■□□□ 1.26
SMPD3-201ENST00000219334 AAMPQ13685 434 aa22.93■■□□□ 1.26
SMPD3-201ENST00000219334 CCDC70Q6NSX1 233 aa22.93■■□□□ 1.26
SMPD3-201ENST00000219334 R3HCC1Q9Y3T6 440 aaKnown RBP22.93■■□□□ 1.26
SMPD3-201ENST00000219334 CCDC7Q96M83 1385 aa22.93■■□□□ 1.26
SMPD3-201ENST00000219334 XBP1P17861 261 aa22.92■■□□□ 1.26
SMPD3-201ENST00000219334 NCOA2Q15596 1464 aa22.92■■□□□ 1.26
SMPD3-201ENST00000219334 CCAR2Q8N163 923 aaKnown RBP22.92■■□□□ 1.26
SMPD3-201ENST00000219334 PRKAR2BP31323 418 aa22.92■■□□□ 1.26
SMPD3-201ENST00000219334 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.92■■□□□ 1.26
SMPD3-201ENST00000219334 FSD1Q9BTV5 496 aa22.91■■□□□ 1.26
SMPD3-201ENST00000219334 CASKIN1Q8WXD9 1431 aa22.91■■□□□ 1.26
SMPD3-201ENST00000219334 CABP4P57796 275 aa22.91■■□□□ 1.26
SMPD3-201ENST00000219334 SART3Q15020 963 aaKnown RBP22.91■■□□□ 1.26
SMPD3-201ENST00000219334 NINLQ9Y2I6 1382 aa22.9■■□□□ 1.26
SMPD3-201ENST00000219334 POGZQ7Z3K3 1410 aa22.9■■□□□ 1.26
SMPD3-201ENST00000219334 SURF6O75683 361 aaKnown RBP22.9■■□□□ 1.26
SMPD3-201ENST00000219334 DDX54Q8TDD1 881 aaKnown RBP22.9■■□□□ 1.26
SMPD3-201ENST00000219334 MTMR7Q9Y216 660 aa22.9■■□□□ 1.26
SMPD3-201ENST00000219334 CCAR1Q8IX12 1150 aaKnown RBP22.9■■□□□ 1.26
SMPD3-201ENST00000219334 TCP11L2Q8N4U5 519 aa22.89■■□□□ 1.26
SMPD3-201ENST00000219334 CNTROBQ8N137 903 aa22.89■■□□□ 1.25
SMPD3-201ENST00000219334 SCAPERQ9BY12 1400 aa22.89■■□□□ 1.25
SMPD3-201ENST00000219334 SLC4A3P48751 1232 aa22.88■■□□□ 1.25
SMPD3-201ENST00000219334 PRDM11Q9NQV5 511 aa22.88■■□□□ 1.25
SMPD3-201ENST00000219334 GNL3LQ9NVN8 582 aaKnown RBP22.88■■□□□ 1.25
SMPD3-201ENST00000219334 SPG7Q9UQ90 795 aa22.88■■□□□ 1.25
SMPD3-201ENST00000219334 SLC3A2P08195 630 aaKnown RBP22.88■■□□□ 1.25
SMPD3-201ENST00000219334 LRRC9Q6ZRR7 1453 aa22.88■■□□□ 1.25
SMPD3-201ENST00000219334 CDK19Q9BWU1 502 aa22.88■■□□□ 1.25
SMPD3-201ENST00000219334 CNNM1Q9NRU3 951 aa22.87■■□□□ 1.25
SMPD3-201ENST00000219334 CCDC73Q6ZRK6 1079 aa22.87■■□□□ 1.25
SMPD3-201ENST00000219334 PSMA5P28066 241 aa22.87■■□□□ 1.25
SMPD3-201ENST00000219334 FOSBP53539 338 aa22.87■■□□□ 1.25
SMPD3-201ENST00000219334 PLEKHH2Q8IVE3 1493 aa22.87■■□□□ 1.25
SMPD3-201ENST00000219334 PNISRQ8TF01 805 aaKnown RBP22.86■■□□□ 1.25
SMPD3-201ENST00000219334 SLC26A8Q96RN1 970 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 HFM1A2PYH4 1435 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 ZNF530Q6P9A1 599 aaPredicted RBP22.85■■□□□ 1.25
SMPD3-201ENST00000219334 PIP4K2BP78356 416 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 PANK1Q8TE04 598 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 DNAJC2Q99543 621 aaKnown RBP22.85■■□□□ 1.25
SMPD3-201ENST00000219334 TSHZ2Q9NRE2 1034 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 ADAMTS8Q9UP79 889 aa22.85■■□□□ 1.25
SMPD3-201ENST00000219334 CABP1Q9NZU7 370 aa22.84■■□□□ 1.25
SMPD3-201ENST00000219334 MRC2Q9UBG0 1479 aa22.84■■□□□ 1.25
SMPD3-201ENST00000219334 CDC45O75419 566 aa22.84■■□□□ 1.25
SMPD3-201ENST00000219334 CNTLNQ9NXG0 1405 aa22.83■■□□□ 1.25
SMPD3-201ENST00000219334 RAPGEF3O95398 923 aa22.83■■□□□ 1.25
SMPD3-201ENST00000219334 HDGFL1Q5TGJ6 251 aa22.83■■□□□ 1.25
SMPD3-201ENST00000219334 ERC1Q8IUD2 1116 aa22.83■■□□□ 1.25
SMPD3-201ENST00000219334 SULT6B1Q6IMI4 303 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms