RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	ARO1	P08566	1588 aa	Known RBP	3.48	□□□□□ -1.85
TFB4	YPR056W	YDL022C-A	P0C5L6	82 aa		3.48	□□□□□ -1.85
TFB4	YPR056W	PAU7	P39545	55 aa		3.47	□□□□□ -1.85
TFB4	YPR056W	DNF2	Q12675	1612 aa		3.47	□□□□□ -1.85
TFB4	YPR056W	ACC1	Q00955	2233 aa	Known RBP	3.46	□□□□□ -1.86
TFB4	YPR056W	YKL023C-A	Q2V2P3	75 aa		3.46	□□□□□ -1.86
TFB4	YPR056W	AQY2	P0CD90	149 aa		3.45	□□□□□ -1.86
TFB4	YPR056W	YIL086C	P40503	102 aa		3.45	□□□□□ -1.86
TFB4	YPR056W	USO1	P25386	1790 aa		3.45	□□□□□ -1.86
TFB4	YPR056W	LCL1	Q02786	101 aa		3.44	□□□□□ -1.86
TFB4	YPR056W	STU1	P38198	1513 aa		3.44	□□□□□ -1.86
TFB4	YPR056W	YNL042W-B	Q3E7Z2	85 aa		3.43	□□□□□ -1.86
TFB4	YPR056W	YHR212W-A	P0CX91	67 aa		3.42	□□□□□ -1.86
TFB4	YPR056W	DNF3	Q12674	1656 aa		3.42	□□□□□ -1.86
TFB4	YPR056W	SHU1	P38751	150 aa		3.41	□□□□□ -1.86
TFB4	YPR056W	YMR007W	Q03675	126 aa		3.41	□□□□□ -1.86
TFB4	YPR056W	YMR122W-A	Q3E842	84 aa		3.41	□□□□□ -1.86
TFB4	YPR056W	YOR032W-A	Q8TGS1	66 aa		3.41	□□□□□ -1.86
TFB4	YPR056W	YOR072W	Q08486	104 aa		3.4	□□□□□ -1.87
TFB4	YPR056W	YKL018C-A	Q3E7A7	99 aa		3.4	□□□□□ -1.87
TFB4	YPR056W	MGR2	Q02889	113 aa		3.39	□□□□□ -1.87
TFB4	YPR056W	YBR201C-A	Q2V2Q3	67 aa		3.38	□□□□□ -1.87
TFB4	YPR056W	NUP188	P52593	1655 aa	Known RBP	3.38	□□□□□ -1.87
TFB4	YPR056W	NUP170	P38181	1502 aa		3.36	□□□□□ -1.87
TFB4	YPR056W	YAR064W	P39563	99 aa		3.36	□□□□□ -1.87
TFB4	YPR056W	YDR182W-A	Q3E796	67 aa		3.36	□□□□□ -1.87
TFB4	YPR056W	BPH1	P25356	2167 aa		3.35	□□□□□ -1.87
TFB4	YPR056W	YCR001W	P25347	104 aa		3.35	□□□□□ -1.87
TFB4	YPR056W	SGF11	Q03067	99 aa		3.35	□□□□□ -1.87
TFB4	YPR056W	ATP17	Q06405	101 aa		3.35	□□□□□ -1.87
TFB4	YPR056W	YOR093C	Q12275	1648 aa		3.34	□□□□□ -1.87
TFB4	YPR056W	HUG1	Q6Q5K6	68 aa		3.34	□□□□□ -1.87
TFB4	YPR056W	Q0032	Q9ZZX7	96 aa		3.34	□□□□□ -1.87
TFB4	YPR056W	YOL013W-A	P0C272	63 aa	Predicted RBP	3.33	□□□□□ -1.88
TFB4	YPR056W	THO2	P53552	1597 aa	Known RBP	3.33	□□□□□ -1.88
TFB4	YPR056W	MVB12	P42939	101 aa		3.32	□□□□□ -1.88
TFB4	YPR056W	YOR034C-A	Q3E735	80 aa		3.32	□□□□□ -1.88
TFB4	YPR056W	VMR1	P38735	1592 aa		3.31	□□□□□ -1.88
TFB4	YPR056W	YNL190W	P53872	204 aa		3.31	□□□□□ -1.88
TFB4	YPR056W	ATP18	P81450	59 aa		3.3	□□□□□ -1.88
TFB4	YPR056W	RPS30A	P0CX33	63 aa	Known RBP	3.29	□□□□□ -1.88
TFB4	YPR056W	RPS30B	P0CX34	63 aa	Known RBP	3.29	□□□□□ -1.88
TFB4	YPR056W	MLP2	P40457	1679 aa		3.29	□□□□□ -1.88
TFB4	YPR056W	YJR128W	P47162	119 aa		3.28	□□□□□ -1.88
TFB4	YPR056W	YOL097W-A	Q3E7Y9	61 aa		3.28	□□□□□ -1.88
TFB4	YPR056W	EDC1	P53080	175 aa	Predicted RBP	3.27	□□□□□ -1.89
TFB4	YPR056W	SEC16	P48415	2195 aa	Known RBP	3.25	□□□□□ -1.89
TFB4	YPR056W	COX7	P10174	60 aa		3.25	□□□□□ -1.89
TFB4	YPR056W	HUB1	Q6Q546	73 aa		3.25	□□□□□ -1.89
TFB4	YPR056W	SDH6	Q3E785	79 aa		3.24	□□□□□ -1.89
TFB4	YPR056W	CHC1	P22137	1653 aa	Known RBP	3.23	□□□□□ -1.89
TFB4	YPR056W	YOL166W-A	Q8TGJ1	51 aa		3.22	□□□□□ -1.89
TFB4	YPR056W	YIL102C	P40488	101 aa		3.21	□□□□□ -1.9
TFB4	YPR056W	POL2	P21951	2222 aa	Known RBP	3.18	□□□□□ -1.9
TFB4	YPR056W	YMR141C	P40211	102 aa		3.18	□□□□□ -1.9
TFB4	YPR056W	BLM10	P43583	2143 aa		3.18	□□□□□ -1.9
TFB4	YPR056W	SNF2	P22082	1703 aa		3.18	□□□□□ -1.9
TFB4	YPR056W	RKR1	Q04781	1562 aa		3.17	□□□□□ -1.9
TFB4	YPR056W	HHY1	P39982	102 aa		3.16	□□□□□ -1.9
TFB4	YPR056W	YOR192C-C	Q3E736	78 aa		3.16	□□□□□ -1.9
TFB4	YPR056W	KOG1	P38873	1557 aa		3.16	□□□□□ -1.9
TFB4	YPR056W	HFA1	P32874	2273 aa		3.16	□□□□□ -1.9
TFB4	YPR056W	BEM2	P39960	2167 aa	Known RBP	3.13	□□□□□ -1.91
TFB4	YPR056W	SMX2	P40204	77 aa	Known RBP	3.13	□□□□□ -1.91
TFB4	YPR056W	YPR108W-A	Q3E7B3	70 aa		3.13	□□□□□ -1.91
TFB4	YPR056W	NUP192	P47054	1683 aa		3.12	□□□□□ -1.91
TFB4	YPR056W	RPL38	P49167	78 aa	Known RBP	3.12	□□□□□ -1.91
TFB4	YPR056W	PDR15	Q04182	1529 aa	Known RBP	3.12	□□□□□ -1.91
TFB4	YPR056W	YBR072C-A	Q3E794	53 aa		3.09	□□□□□ -1.91
TFB4	YPR056W	YJR107C-A	P0CT86	78 aa		3.08	□□□□□ -1.92
TFB4	YPR056W	YLR146W-A	Q2V2P1	62 aa		3.08	□□□□□ -1.92
TFB4	YPR056W	YHR213W-B	Q8TGK1	99 aa		3.07	□□□□□ -1.92
TFB4	YPR056W	YBL039W-B	P0C268	59 aa		3.06	□□□□□ -1.92
TFB4	YPR056W	YBR032W	P38223	100 aa		3.06	□□□□□ -1.92
TFB4	YPR056W	RPC10	P40422	70 aa		3.06	□□□□□ -1.92
TFB4	YPR056W	YMR001C-A	Q8TGS9	76 aa		3.04	□□□□□ -1.92
TFB4	YPR056W	YBR200W-A	Q3E755	54 aa		3.02	□□□□□ -1.93
TFB4	YPR056W	YLR157W-D	P0CE99	70 aa		3.01	□□□□□ -1.93
TFB4	YPR056W	HIR3	P47171	1648 aa		3.01	□□□□□ -1.93
TFB4	YPR056W	YOR011W-A	Q3E807	68 aa		3	□□□□□ -1.93
TFB4	YPR056W	AUA1	P32450	94 aa		2.98	□□□□□ -1.93
TFB4	YPR056W	HUA1	P40325	198 aa		2.98	□□□□□ -1.93
TFB4	YPR056W	HKR1	P41809	1802 aa		2.94	□□□□□ -1.94
TFB4	YPR056W	YOR394C-A	Q8TGJ0	55 aa		2.91	□□□□□ -1.94
TFB4	YPR056W	URA2	P07259	2214 aa	Known RBP	2.91	□□□□□ -1.94
TFB4	YPR056W	BUD3	P25558	1636 aa		2.9	□□□□□ -1.94
TFB4	YPR056W	ATG2	P53855	1592 aa		2.9	□□□□□ -1.95
TFB4	YPR056W	RPS27A	P35997	82 aa	Known RBP	2.86	□□□□□ -1.95
TFB4	YPR056W	RPL43A	P0CX25	92 aa	Known RBP	2.85	□□□□□ -1.95
TFB4	YPR056W	RPL43B	P0CX26	92 aa		2.85	□□□□□ -1.95
TFB4	YPR056W	YGR025W	P53216	100 aa		2.84	□□□□□ -1.95
TFB4	YPR056W	OLI1	P61829	76 aa		2.84	□□□□□ -1.95
TFB4	YPR056W	GCN2	P15442	1659 aa		2.83	□□□□□ -1.96
TFB4	YPR056W	FIG2	P25653	1609 aa		2.82	□□□□□ -1.96
TFB4	YPR056W	YPR010C-A	A5Z2X5	72 aa		2.77	□□□□□ -1.97
TFB4	YPR056W	YBR230W-A	Q3E762	66 aa		2.75	□□□□□ -1.97
TFB4	YPR056W	YLR157W-E	P0CF00	54 aa		2.73	□□□□□ -1.97
TFB4	YPR056W	YLR307C-A	Q3E825	87 aa		2.71	□□□□□ -1.98
TFB4	YPR056W	YOL164W-A	Q3E7A5	60 aa		2.7	□□□□□ -1.98
TFB4	YPR056W	RPL37A	P49166	88 aa	Known RBP	2.69	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 55.6 ms