RNA–Protein interactions for RNA: ENST00000640501.1

PNKP-231, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 5

Gene PNKP, Length 151 nt, Biotype non stop decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-231	ENST00000640501	CDKL3	Q8IVW4	592 aa	Predicted RBP	8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	SLC35B2	Q8TB61	432 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	ACTL9	Q8TC94	416 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	RSPH1	Q8WYR4	309 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	RAPGEF5	Q92565	580 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	TSEN34	Q9BSV6	310 aa	Known RBP	8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	CFHR5	Q9BXR6	569 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	DUSP16	Q9BY84	665 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	CDC42EP4	Q9H3Q1	356 aa	Known RBP	8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	KLHL11	Q9NVR0	708 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	PCSK1N	Q9UHG2	260 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	DNPEP	Q9ULA0	475 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	CDH9	Q9ULB4	789 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	NOVA2	Q9UNW9	492 aa	Known RBP	8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	R3HDM2	Q9Y2K5	976 aa	Known RBP	8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	NEU2	Q9Y3R4	380 aa		8.69	□□□□□ -1.02
PNKP-231	ENST00000640501	TRIP12	Q14669	1992 aa	Predicted RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	TLDC2	A0PJX2	215 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	EBAG9	O00559	213 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	CAPN9	O14815	690 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DAB1	O75553	588 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SPAG6	O75602	509 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	ENDOD1	O94919	500 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	IFNB1	P01574	187 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	MYCN	P04198	464 aa	Predicted RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	PFKM	P08237	780 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	CTSH	P09668	335 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	RBP3	P10745	1247 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	LCP1	P13796	627 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	GBP2	P32456	591 aa	Predicted RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	NOS2	P35228	1153 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	MLH1	P40692	756 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	MATK	P42679	507 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	VPS41	P49754	854 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	BCAR1	P56945	870 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	MAGOH	P61326	146 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	YWHAZ	P63104	245 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DYNLT1	P63172	113 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SARNP	P82979	210 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	XRCC4	Q13426	336 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	LLGL1	Q15334	1064 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	TRIP13	Q15645	432 aa	Predicted RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KCNA10	Q16322	511 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	HIF1A	Q16665	826 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	CDO1	Q16878	200 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	ARL13B	Q3SXY8	428 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SLC25A52	Q3SY17	297 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	CCDC14	Q49A88	953 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	ATP13A4	Q4VNC1	1196 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DNAJC21	Q5F1R6	531 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KCNT1	Q5JUK3	1230 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SCARA3	Q6AZY7	606 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DARS2	Q6PI48	645 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SCUBE3	Q8IX30	993 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	PDIK1L	Q8N165	341 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	ARRDC4	Q8NCT1	418 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KLHDC9	Q8NEP7	349 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	TRPV1	Q8NER1	839 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	URGCP	Q8TCY9	931 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	RAET1E	Q8TD07	263 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SLC2A14	Q8TDB8	520 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	PXYLP1	Q8TE99	480 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KBTBD7	Q8WVZ9	684 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	CENPT	Q96BT3	561 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SENP8	Q96LD8	212 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	RNF157	Q96PX1	679 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	RBM15	Q96T37	977 aa	Known RBP eCLIP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DDX23	Q9BUQ8	820 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	FTHL17	Q9BXU8	183 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KLC2	Q9H0B6	622 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	NSRP1	Q9H0G5	558 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SEMA4A	Q9H3S1	761 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DDX43	Q9NXZ2	648 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SENP1	Q9P0U3	644 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	PAK5	Q9P286	719 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	KANSL3	Q9P2N6	904 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	DDX20	Q9UHI6	824 aa	Known RBP	8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	SCN1A	P35498	2009 aa		8.68	□□□□□ -1.02
PNKP-231	ENST00000640501	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	8.67	□□□□□ -1.02
PNKP-231	ENST00000640501		A0A0U1RQF3	1178 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	MYADML2	A6NDP7	307 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	ARL5C	A6NH57	179 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	C3orf70	A6NLC5	250 aa	Predicted RBP	8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	HACD1	B0YJ81	288 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501		H3BRJ5	948 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501		H7C0C1	242 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	NDUFAB1	O14561	156 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	PTGES	O14684	152 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	GABRD	O14764	452 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	PPEF2	O14830	753 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	PAPSS1	O43252	624 aa	Predicted RBP	8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	TRAPPC3	O43617	180 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	EOMES	O95936	686 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	ZBED1	O96006	694 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	F9	P00740	461 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	CCDC130	P13994	396 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	IVD	P26440	423 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	IL1R2	P27930	398 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	MAGEA4	P43358	317 aa		8.67	□□□□□ -1.02
PNKP-231	ENST00000640501	ATP5O	P48047	213 aa		8.67	□□□□□ -1.02

Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms