RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 TRPV5Q9NQA5 729 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 GMIPQ9P107 970 aa21.84■■□□□ 1.09
CLN3-240ENST00000631023 BECN2A8MW95 431 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 XPO1O14980 1071 aaKnown RBP21.83■■□□□ 1.09
CLN3-240ENST00000631023 MED7O43513 233 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 SETSIPP0DME0 302 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 BRD2P25440 801 aaKnown RBP21.83■■□□□ 1.09
CLN3-240ENST00000631023 TUBP50607 506 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 COPB1P53618 953 aaKnown RBP21.83■■□□□ 1.09
CLN3-240ENST00000631023 PLCB2Q00722 1185 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 APBA1Q02410 837 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 PDE4CQ08493 712 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 SLC44A4Q53GD3 710 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 FBXL6Q8N531 539 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 SHC3Q92529 594 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 SLC22A12Q96S37 553 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 ARHGEF3Q9NR81 526 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 WDR3Q9UNX4 943 aaKnown RBP eCLIP21.83■■□□□ 1.09
CLN3-240ENST00000631023 CCL26Q9Y258 94 aa21.83■■□□□ 1.09
CLN3-240ENST00000631023 LRRC10BA6NIK2 292 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 CAVIN2O95810 425 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 OAS1P00973 400 aaKnown RBP21.82■■□□□ 1.08
CLN3-240ENST00000631023 ZDHHC11BP0C7U3 371 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 RFX1P22670 979 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 PRKCQQ04759 706 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 CC2D1AQ6P1N0 951 aaPredicted RBP21.82■■□□□ 1.08
CLN3-240ENST00000631023 UBA3Q8TBC4 463 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 LRRC3BQ96PB8 259 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 ARHGAP26Q9UNA1 814 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 USP3Q9Y6I4 520 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 MIA3Q5JRA6 1907 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 ZNF318Q5VUA4 2279 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 STK25O00506 426 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 PSEN1P49768 467 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 SLC7A9P82251 487 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 RAB41Q5JT25 222 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 KLHDC7AQ5VTJ3 777 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 CCDC186Q7Z3E2 898 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 DHX40Q8IX18 779 aaKnown RBP21.82■■□□□ 1.08
CLN3-240ENST00000631023 CSGALNACT1Q8TDX6 532 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 LSM14BQ9BX40 385 aaKnown RBP21.82■■□□□ 1.08
CLN3-240ENST00000631023 NACA2Q9H009 215 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 HSD3B7Q9H2F3 369 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 LRRC4Q9HBW1 653 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 PLCB1Q9NQ66 1216 aa21.82■■□□□ 1.08
CLN3-240ENST00000631023 KRBA1A5PL33 1030 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 CYP26A1O43174 497 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 OLFM2O95897 454 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 TCF3P15923 654 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 GNA15P30679 374 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 PLA2G4AP47712 749 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 PTK2Q05397 1052 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 MLF2Q15773 248 aaPredicted RBP21.81■■□□□ 1.08
CLN3-240ENST00000631023 ZSCAN23Q3MJ62 389 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 PKDCCQ504Y2 493 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 ZNF606Q8WXB4 792 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 RNF38Q9H0F5 515 aa21.81■■□□□ 1.08
CLN3-240ENST00000631023 LGALS16A8MUM7 142 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 M0QYV0 167 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 THAP12O43422 761 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 PDGFBP01127 241 aaPredicted RBP21.8■■□□□ 1.08
CLN3-240ENST00000631023 MBL2P11226 248 aaPredicted RBP21.8■■□□□ 1.08
CLN3-240ENST00000631023 TKTL1P51854 596 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 RAPGEF1Q13905 1077 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 DPY19L2P1Q6NXN4 242 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 DDX42Q86XP3 938 aaKnown RBP eCLIP21.8■■□□□ 1.08
CLN3-240ENST00000631023 ARHGAP18Q8N392 663 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 TTC16Q8NEE8 873 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 FLCNQ8NFG4 579 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 SH3RF2Q8TEC5 729 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 SLC35F5Q8WV83 523 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 KCTD13Q8WZ19 329 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 ZSWIM1Q9BR11 485 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 GKN1Q9NS71 199 aa21.8■■□□□ 1.08
CLN3-240ENST00000631023 FOXN3O00409 490 aaPredicted RBP21.79■■□□□ 1.08
CLN3-240ENST00000631023 COCHO43405 550 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 TLR5O60602 858 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 CALCAP01258 141 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 UCHL3P15374 230 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 CLCN5P51795 746 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 STARD6P59095 220 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 BPIFB4P59827 614 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 TPM4P67936 248 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 UBXN1Q04323 297 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 MEA1Q16626 185 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 TADA2BQ86TJ2 420 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 CCSER2Q9H7U1 834 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 HEBP1Q9NRV9 189 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 NAGPAQ9UK23 515 aa21.79■■□□□ 1.08
CLN3-240ENST00000631023 TULP2O00295 520 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 ARNTLO00327 626 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 ZBED1O96006 694 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 RALAP11233 206 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 GLULP15104 373 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 MLLT6P55198 1093 aaPredicted RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 USP4Q13107 963 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 MTF1Q14872 753 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 DRAP1Q14919 205 aaPredicted RBP21.78■■□□□ 1.08
CLN3-240ENST00000631023 IQCB1Q15051 598 aa21.78■■□□□ 1.08
CLN3-240ENST00000631023 ZNF77Q15935 545 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms