RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 MARCH7Q9H992 704 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ARMT1Q9H993 441 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ARHGEF4Q9NR80 690 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 DDX56Q9NY93 547 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 DAPK2Q9UIK4 370 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 POU2F3Q9UKI9 436 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 SOX13Q9UN79 622 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PCDHGA3Q9Y5H0 932 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ALG6Q9Y672 507 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 TLL2Q9Y6L7 1015 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 TNS2Q63HR2 1409 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 LOC105371267A0A1B0GV96 52 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PVALEFA0A1B0GWK0 134 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PSMD12O00232 456 aaPredicted RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 GIPC1O14908 333 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 SLC9A1P19634 815 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 CRKLP46109 303 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 IREB2P48200 963 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 SUZ12Q15022 739 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 NPY5RQ15761 445 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ODR4Q5SWX8 454 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 SHQ1Q6PI26 577 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 XKR5Q6UX68 686 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PPM1KQ8N3J5 372 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 MAGEB6Q8N7X4 407 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 SVIPQ8NHG7 77 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 C1orf74Q96LT6 269 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PWWP2AQ96N64 755 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ZBED2Q9BTP6 218 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 RTFDC1Q9BY42 306 aaPredicted RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 ADAM33Q9BZ11 813 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 RNF38Q9H0F5 515 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 RNF41Q9H4P4 317 aaPredicted RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 C17orf75Q9HAS0 396 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 XAB2Q9HCS7 855 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 HERC5Q9UII4 1024 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 PAPPAQ13219 1627 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 ATP8B3O60423 1300 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 NHSQ6T4R5 1651 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 DDX60Q8IY21 1712 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 LAMB4A4D0S4 1761 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 LRRC72A6NJI9 287 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 J3QRK9 145 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 SNX16P57768 344 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 KCNH2Q12809 1159 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 GK3PQ14409 553 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PDK1Q15118 436 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 CRY1Q16526 586 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 OGFRL1Q5TC84 451 aaPredicted RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 RHBDF2Q6PJF5 856 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 C4orf22Q6V702 233 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 FRA10AC1Q70Z53 315 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 TTC13Q8NBP0 860 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 TMC2Q8TDI7 906 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 LRRC15Q8TF66 581 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 PSPC1Q8WXF1 523 aaKnown RBP8.22□□□□□ -1.09
VPS11-209ENST00000622309 FBXL8Q96CD0 374 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 WNK4Q96J92 1243 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 AK8Q96MA6 479 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 VPS45Q9NRW7 570 aa8.22□□□□□ -1.09
VPS11-209ENST00000622309 NIP7Q9Y221 180 aaKnown RBP eCLIP8.22□□□□□ -1.09
VPS11-209ENST00000622309 LOC102724428A0A0B4J2F2 783 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 WTIPA6NIX2 430 aaPredicted RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 MEI4A8MW99 385 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 PRKAB2O43741 272 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 PRMT3O60678 531 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 SULT1C4O75897 302 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 CIAO1O76071 339 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 CRYZL1O95825 349 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 FYNP06241 537 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 PSMC3P17980 439 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 RPA1P27694 616 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 IFNA8P32881 189 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 HSPA13P48723 471 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 HNRNPFP52597 415 aaKnown RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 SIK1P57059 783 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 MRPL28Q13084 256 aaKnown RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 ITPK1Q13572 414 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 UBE3CQ15386 1083 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 ALX1Q15699 326 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 SGO2Q562F6 1265 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 HERC4Q5GLZ8 1057 aaPredicted RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 RBM20Q5T481 1227 aaKnown RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 C6orf52Q5T4I8 152 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 FAM91A1Q658Y4 838 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 DCLRE1AQ6PJP8 1040 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 USP43Q70EL4 1123 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 BTN2A1Q7KYR7 527 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 SLC13A5Q86YT5 568 aaPredicted RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 TRIM59Q8IWR1 403 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 BLIDQ8IZY5 108 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 OSCP1Q8WVF1 389 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 KRT35Q92764 455 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 ATP2A3Q93084 1043 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 RILPQ96NA2 401 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 STRBPQ96SI9 672 aaKnown RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 TRIM56Q9BRZ2 755 aaKnown RBP8.21□□□□□ -1.09
VPS11-209ENST00000622309 IMPG2Q9BZV3 1241 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 CAAP1Q9H8G2 361 aa8.21□□□□□ -1.09
VPS11-209ENST00000622309 VPS37BQ9H9H4 285 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms