RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 JOSD2Q8TAC2 188 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 RIN2Q8WYP3 895 aaPredicted RBP12.32□□□□□ -0.44
PDPN-211ENST00000617617 PKNOX2Q96KN3 472 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 RPGRIP1Q96KN7 1286 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 GDF15Q99988 308 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 TTLL2Q9BWV7 592 aa12.32□□□□□ -0.44
PDPN-211ENST00000617617 HELZP42694 1942 aaKnown RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 LINC01553A4QN01 128 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 RTN3O95197 1032 aaPredicted RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 ZBED1O96006 694 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 MATKP42679 507 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 NDUFV1P49821 464 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 RPL10AP62906 217 aaKnown RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 ROR1Q01973 937 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 TRNP1Q6NT89 227 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 STRADAQ7RTN6 431 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 CREG2Q8IUH2 290 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 SCUBE3Q8IX30 993 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 SIX6OS1Q8N1H7 587 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 ZNF461Q8TAF7 563 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 OVCA2Q8WZ82 227 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 ZNF592Q92610 1267 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 KCNK16Q96T55 309 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 FBXO44Q9H4M3 255 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 ST7Q9NRC1 585 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 WDR27A2RRH5 827 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 ZNF487B1APH4 448 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 PAPLNO95428 1278 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 TUFMP49411 452 aaKnown RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 CKAP4Q07065 602 aaKnown RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 FAM117BQ6P1L5 589 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 RNF19BQ6ZMZ0 732 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 RHOT1Q8IXI2 618 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 TRIM7Q9C029 511 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 MRPL17Q9NRX2 175 aaKnown RBP12.31□□□□□ -0.44
PDPN-211ENST00000617617 EHD2Q9NZN4 543 aa12.31□□□□□ -0.44
PDPN-211ENST00000617617 ENC1O14682 589 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 URI1O94763 535 aaPredicted RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 ATF2P15336 505 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 CYP2F1P24903 491 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 NOS2P35228 1153 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 ERVK-21P61565 698 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 SLC25A11Q02978 314 aaKnown RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 CCDC14Q49A88 953 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 PRSS55Q6UWB4 352 aaPredicted RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 GPRIN1Q7Z2K8 1008 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 PSTKQ8IV42 348 aaKnown RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 VPS52Q8N1B4 723 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 NUP93Q8N1F7 819 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 ARHGAP18Q8N392 663 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 CEP112Q8N8E3 955 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 FAM71BQ8TC56 605 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 TEKT4Q8WW24 435 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 BTBD6Q96KE9 485 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 POPDC2Q9HBU9 364 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 DDX56Q9NY93 547 aaKnown RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.3□□□□□ -0.44
PDPN-211ENST00000617617 CDY1Q9Y6F8 540 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 F8VP50 259 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 GOLGA8SH3BPF8 625 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 LCP1P13796 627 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 DESP17661 470 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 PSMA2P25787 234 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 AIF1P55008 147 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 COPS2P61201 443 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 YWHAZP63104 245 aaKnown RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 EIF4EBP2Q13542 120 aaPredicted RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 TAZQ16635 292 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 SLC25A52Q3SY17 297 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 SNX30Q5VWJ9 437 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 TCEAL8Q8IYN2 117 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 ARFGAP1Q8N6T3 406 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 KLHL23Q8NBE8 558 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 RXFP2Q8WXD0 754 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 PIWIL1Q96J94 861 aaKnown RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 B3GALT6Q96L58 329 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 TBCBQ99426 244 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 NPY6RQ99463 290 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 ULBP1Q9BZM6 244 aa12.3□□□□□ -0.44
PDPN-211ENST00000617617 CHORDC1Q9UHD1 332 aaPredicted RBP12.3□□□□□ -0.44
PDPN-211ENST00000617617 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.3□□□□□ -0.44
PDPN-211ENST00000617617 CCDC85CA6NKD9 419 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 NCK2O43639 380 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 CPB1P15086 417 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 GRIK1P39086 918 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 PSEN1P49768 467 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 DCAF12L1Q5VU92 463 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 KIAA1841Q6NSI8 718 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 EXD1Q8NHP7 514 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 TRMT2BQ96GJ1 504 aaKnown RBP12.29□□□□□ -0.44
PDPN-211ENST00000617617 RNPC3Q96LT9 517 aaKnown RBP12.29□□□□□ -0.44
PDPN-211ENST00000617617 RHOBTB2Q9BYZ6 727 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 ABI2Q9NYB9 513 aaPredicted RBP12.29□□□□□ -0.44
PDPN-211ENST00000617617 EFR3BQ9Y2G0 817 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 LCHNA4D1U4 455 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 SPOPO43791 374 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 LRCH4O75427 683 aa12.29□□□□□ -0.44
PDPN-211ENST00000617617 IGLV3-25P01717 112 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms