RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 POLR3BQ9NW08 1133 aaPredicted RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 FANCLQ9NW38 375 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 HOXC10Q9NYD6 342 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 ASTN1O14525 1302 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 MYH2Q9UKX2 1941 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 TMEM8BA6NDV4 472 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 ELL2O00472 640 aaPredicted RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 TRIM24O15164 1050 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 PRC1O43663 620 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 CTNNB1P35222 781 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 GYS2P54840 703 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 TBX4P57082 545 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 RHBDL3P58872 404 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 HTRA4P83105 476 aaPredicted RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 BFSP2Q13515 415 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 GPNMBQ14956 572 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 TMEM177Q53S58 311 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 METTL24Q5JXM2 366 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 SPECC1Q5M775 1068 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 C19orf48Q6RUI8 117 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 APBB1IPQ7Z5R6 666 aaPredicted RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 KIAA0907Q7Z7F0 614 aaPredicted RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 RBM23Q86U06 439 aaKnown RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 TLK2Q86UE8 772 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 DZIP1Q86YF9 867 aaKnown RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 HOMER1Q86YM7 354 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 MSL3Q8N5Y2 521 aaKnown RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 EFHBQ8N7U6 833 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 ACER1Q8TDN7 264 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 SUSD6Q92537 303 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 PPP2R3CQ969Q6 453 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 YME1L1Q96TA2 773 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 DNAJC18Q9H819 358 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 PI4KBQ9UBF8 816 aa5.16□□□□□ -1.58
LINC00540-201ENST00000611481 ANKRD17O75179 2603 aaKnown RBP5.16□□□□□ -1.58
LINC00540-201ENST00000611481 NLRC5Q86WI3 1866 aa5.15□□□□□ -1.58
LINC00540-201ENST00000611481 IGSF10Q6WRI0 2623 aa5.15□□□□□ -1.58
LINC00540-201ENST00000611481 DSPP15924 2871 aaKnown RBP5.15□□□□□ -1.58
LINC00540-201ENST00000611481 MYH13Q9UKX3 1938 aa5.15□□□□□ -1.58
LINC00540-201ENST00000611481 SPTA1P02549 2419 aa5.15□□□□□ -1.58
LINC00540-201ENST00000611481 NBEAQ8NFP9 2946 aa5.15□□□□□ -1.58
LINC00540-201ENST00000611481 C2CD4DB7Z1M9 353 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 CREB3O43889 395 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 SCAF4O95104 1147 aaKnown RBP5.15□□□□□ -1.59
LINC00540-201ENST00000611481 GLP2RO95838 553 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 SLC25A27O95847 323 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 GH2P01242 217 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 GYPEP15421 78 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 LAG3P18627 525 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 KIR2DL3P43628 341 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 NRIP1P48552 1158 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 TNFAIP2Q03169 654 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 BIRC2Q13490 618 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 TRIM61Q5EBN2 209 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 ADGRD2Q7Z7M1 963 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 SLC7A14Q8TBB6 771 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 C8orf48Q96LL4 319 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 APOL5Q9BWW9 433 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 LSM14BQ9BX40 385 aaKnown RBP5.15□□□□□ -1.59
LINC00540-201ENST00000611481 ABHD16BQ9H3Z7 469 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 SYNPO2LQ9H987 977 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 ERVK-5Q9HDB9 667 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 DNAI1Q9UI46 699 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 GMEB2Q9UKD1 530 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 LOC400499M0QZD8 3231 aa5.15□□□□□ -1.59
LINC00540-201ENST00000611481 DOPEY1Q5JWR5 2465 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 CACNA1IQ9P0X4 2223 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 A0A0A6YYK5 440 aaPredicted RBP5.14□□□□□ -1.59
LINC00540-201ENST00000611481 UBA6A0AVT1 1052 aaPredicted RBP5.14□□□□□ -1.59
LINC00540-201ENST00000611481 FAM221BA6H8Z2 402 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 NBNO60934 754 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 MMP1P03956 469 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 IFIT1P09914 478 aaKnown RBP5.14□□□□□ -1.59
LINC00540-201ENST00000611481 HSPA5P11021 654 aaKnown RBP5.14□□□□□ -1.59
LINC00540-201ENST00000611481 HK1P19367 917 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 MASP1P48740 699 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 RALBP1Q15311 655 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 CCDC6Q16204 474 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 ARHGAP44Q17R89 818 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 LRRC24Q50LG9 513 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 HSP90AB4PQ58FF6 505 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 COLEC12Q5KU26 742 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 TTC38Q5R3I4 469 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 ODR4Q5SWX8 454 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 IL31Q6EBC2 164 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 LRRC8DQ7L1W4 858 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 IGSF22Q8N9C0 903 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 BEND2Q8NDZ0 799 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 SPATA18Q8TC71 538 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 AFAP1L1Q8TED9 768 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 C16orf92Q96LL3 132 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 SYNPO2Q9UMS6 1093 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 TRIP12Q14669 1992 aaPredicted RBP5.14□□□□□ -1.59
LINC00540-201ENST00000611481 MROH7-TTC4A0A0A0MT08 1334 aa5.14□□□□□ -1.59
LINC00540-201ENST00000611481 SIPA1L1O43166 1804 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 ABCA12Q86UK0 2595 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MCM3APO60318 1980 aa5.13□□□□□ -1.59
LINC00540-201ENST00000611481 MICAL3Q7RTP6 2002 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms