RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 CSGALNACT1Q8TDX6 532 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 TFAP2BQ92481 460 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 TLR8Q9NR97 1041 aaKnown RBP17.78■□□□□ 0.44
TRIM28-215ENST00000601150 HEBP1Q9NRV9 189 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 TAB2Q9NYJ8 693 aa17.78■□□□□ 0.44
TRIM28-215ENST00000601150 XPO1O14980 1071 aaKnown RBP17.77■□□□□ 0.44
TRIM28-215ENST00000601150 LETM1O95202 739 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-215ENST00000601150 TPM2P07951 284 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 TCF3P15923 654 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 COL9A1P20849 921 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 AVPR2P30518 371 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 TUBP50607 506 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 KIF11P52732 1056 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 SLC7A9P82251 487 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 PDE4CQ08493 712 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 BST2Q10589 180 aaKnown RBP17.77■□□□□ 0.44
TRIM28-215ENST00000601150 USP4Q13107 963 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 KRT31Q15323 416 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 CNGA2Q16280 664 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 ARHGAP44Q17R89 818 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 ANO6Q4KMQ2 910 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 CC2D1AQ6P1N0 951 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-215ENST00000601150 TPRG1Q6ZUI0 275 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 PIGZQ86VD9 579 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 SH3RF2Q8TEC5 729 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 ZFYVE19Q96K21 471 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 RNF38Q9H0F5 515 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 SIX2Q9NPC8 291 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 GKN1Q9NS71 199 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 HCN4Q9Y3Q4 1203 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 ZDBF2Q9HCK1 2354 aa17.77■□□□□ 0.44
TRIM28-215ENST00000601150 CYP26A1O43174 497 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 SETSIPP0DME0 302 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 GLULP15104 373 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 AOC1P19801 751 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 BRD2P25440 801 aaKnown RBP17.76■□□□□ 0.43
TRIM28-215ENST00000601150 APBA1Q02410 837 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 MTF1Q14872 753 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF77Q15935 545 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 SMYD5Q6GMV2 418 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 CCDC186Q7Z3E2 898 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 TMEM105Q8N8V8 129 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 TTC16Q8NEE8 873 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 ANKRD20A12PQ8NF67 263 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 RIN3Q8TB24 985 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 UBA3Q8TBC4 463 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 DDX23Q9BUQ8 820 aaKnown RBP17.76■□□□□ 0.43
TRIM28-215ENST00000601150 VPS16Q9H269 839 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.76■□□□□ 0.43
TRIM28-215ENST00000601150 USP3Q9Y6I4 520 aa17.76■□□□□ 0.43
TRIM28-215ENST00000601150 KANSL1LA0AUZ9 987 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 COCHO43405 550 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 CALCAP01258 141 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 MBL2P11226 248 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-215ENST00000601150 PSEN1P49768 467 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 KPNA1P52294 538 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-215ENST00000601150 MLLT6P55198 1093 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-215ENST00000601150 NCAPHQ15003 741 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 PDGFRLQ15198 375 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 PKDCCQ504Y2 493 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 RAB41Q5JT25 222 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 ZNF852Q6ZMS4 543 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 AOPEPQ8N6M6 819 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 SHC3Q92529 594 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 MSANTD3Q96H12 275 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 FAM83CQ9BQN1 747 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 BPIFA3Q9BQP9 254 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 ZSWIM1Q9BR11 485 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 CCSER2Q9H7U1 834 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 LIMA1Q9UHB6 759 aaKnown RBP17.75■□□□□ 0.43
TRIM28-215ENST00000601150 DNAJC12Q9UKB3 198 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 CPQQ9Y646 472 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 PIAS3Q9Y6X2 628 aa17.75■□□□□ 0.43
TRIM28-215ENST00000601150 A0A1W2PQH9 124 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 M0QYV0 167 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 LEFTY2O00292 366 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 TULP2O00295 520 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 MAN2B1O00754 1011 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 PI15O43692 258 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 TLR5O60602 858 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 CDK11BP21127 795 aaKnown RBP17.74■□□□□ 0.43
TRIM28-215ENST00000601150 USP8P40818 1118 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 PLA2G4AP47712 749 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 PGFP49763 221 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 ZXDBP98169 803 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 KCNMA1Q12791 1236 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 DDX42Q86XP3 938 aaKnown RBP eCLIP17.74■□□□□ 0.43
TRIM28-215ENST00000601150 PJA1Q8NG27 643 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 NELL2Q99435 816 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 FOXQ1Q9C009 403 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 NACA2Q9H009 215 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 C8orf33Q9H7E9 229 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-215ENST00000601150 NMUR1Q9HB89 426 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 LRRC4Q9HBW1 653 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 CYLDQ9NQC7 956 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 DUS2Q9NX74 493 aaKnown RBP17.74■□□□□ 0.43
TRIM28-215ENST00000601150 SMPD4Q9NXE4 827 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 GTSE1Q9NYZ3 720 aa17.74■□□□□ 0.43
TRIM28-215ENST00000601150 MRPS17Q9Y2R5 130 aaKnown RBP17.74■□□□□ 0.43
TRIM28-215ENST00000601150 SIT1Q9Y3P8 196 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms