RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 FKBP15Q5T1M5 1219 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 GJB7Q6PEY0 223 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CCDC186Q7Z3E2 898 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 PIGZQ86VD9 579 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 DHX40Q8IX18 779 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 SIX5Q8N196 739 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 FBXL6Q8N531 539 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 ARL14EPQ8N8R7 260 aaPredicted RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 TFAP2BQ92481 460 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 SLC22A12Q96S37 553 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CYP2S1Q96SQ9 504 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 SMG9Q9H0W8 520 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 HSD3B7Q9H2F3 369 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 MFSD1Q9H3U5 465 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 THG1LQ9NWX6 298 aaKnown RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 GMIPQ9P107 970 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CHORDC1Q9UHD1 332 aaPredicted RBP12.55□□□□□ -0.4
LIG3-213ENST00000590630 ARHGAP26Q9UNA1 814 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 CCL26Q9Y258 94 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 USP3Q9Y6I4 520 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 KMT2EQ8IZD2 1858 aa12.55□□□□□ -0.4
LIG3-213ENST00000590630 LGALS16A8MUM7 142 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 M0QYV0 167 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 ARNTLO00327 626 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 CYP26A1O43174 497 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 MED7O43513 233 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 TCF3P15923 654 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 BRD2P25440 801 aaKnown RBP12.54□□□□□ -0.4
LIG3-213ENST00000590630 PLA2G4AP47712 749 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 PSEN1P49768 467 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 COPB1P53618 953 aaKnown RBP12.54□□□□□ -0.4
LIG3-213ENST00000590630 SLC7A9P82251 487 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 PDE4CQ08493 712 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 KCNMA1Q12791 1236 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 MEA1Q16626 185 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 ZSCAN23Q3MJ62 389 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 PKDCCQ504Y2 493 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 RAB41Q5JT25 222 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 HECTD3Q5T447 861 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 KLHDC7AQ5VTJ3 777 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 DPY19L2P1Q6NXN4 242 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 GPIHBP1Q8IV16 184 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 SUGP1Q8IWZ8 645 aaKnown RBP12.54□□□□□ -0.4
LIG3-213ENST00000590630 SHDQ96IW2 340 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 LRRC3BQ96PB8 259 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 ZSWIM1Q9BR11 485 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 PLCB1Q9NQ66 1216 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 DNAJC12Q9UKB3 198 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 CA14Q9ULX7 337 aa12.54□□□□□ -0.4
LIG3-213ENST00000590630 KRBA1A5PL33 1030 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 BECN2A8MW95 431 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 ATP1A3P13637 1013 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 GLULP15104 373 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 UCHL3P15374 230 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 GNA15P30679 374 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 USP8P40818 1118 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 MLLT6P55198 1093 aaPredicted RBP12.53□□□□□ -0.4
LIG3-213ENST00000590630 PRKCQQ04759 706 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 USP4Q13107 963 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 MLF2Q15773 248 aaPredicted RBP12.53□□□□□ -0.4
LIG3-213ENST00000590630 ZNF77Q15935 545 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 SLC44A4Q53GD3 710 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 CC2D1AQ6P1N0 951 aaPredicted RBP12.53□□□□□ -0.4
LIG3-213ENST00000590630 DDX42Q86XP3 938 aaKnown RBP eCLIP12.53□□□□□ -0.4
LIG3-213ENST00000590630 KIAA1958Q8N8K9 716 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 UBA3Q8TBC4 463 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 SLC35F5Q8WV83 523 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 KCTD13Q8WZ19 329 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 LSM14BQ9BX40 385 aaKnown RBP12.53□□□□□ -0.4
LIG3-213ENST00000590630 RNF38Q9H0F5 515 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 CYLDQ9NQC7 956 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 DAAM1Q9Y4D1 1078 aa12.53□□□□□ -0.4
LIG3-213ENST00000590630 TULP2O00295 520 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 COCHO43405 550 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 THAP12O43422 761 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 TLR5O60602 858 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 ZBED1O96006 694 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 PDGFBP01127 241 aaPredicted RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 MBL2P11226 248 aaPredicted RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 CLCN5P51795 746 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 TKTL1P51854 596 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 STARD6P59095 220 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 BPIFB4P59827 614 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 UBXN1Q04323 297 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 PTK2Q05397 1052 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 RAPGEF1Q13905 1077 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 MTF1Q14872 753 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 IQCB1Q15051 598 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 PM20D1Q6GTS8 502 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 ASTLQ6HA08 431 aaPredicted RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 KLHDC10Q6PID8 442 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 C1orf228Q6PIY5 440 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 APTXQ7Z2E3 356 aaKnown RBP12.52□□□□□ -0.41
LIG3-213ENST00000590630 TADA2BQ86TJ2 420 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 FAM71AQ8IYT1 594 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 SIX6OS1Q8N1H7 587 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 SCML4Q8N228 414 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 ARHGAP18Q8N392 663 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 ZNF276Q8N554 614 aa12.52□□□□□ -0.41
LIG3-213ENST00000590630 CSGALNACT1Q8TDX6 532 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms