RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 LRRC8CQ8TDW0 803 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ARHGEF2Q92974 986 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 NCLNQ969V3 563 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 DACT3Q96B18 629 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 LENG9Q96B70 501 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MTBPQ96DY7 904 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 PBKQ96KB5 322 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RMDN2Q96LZ7 410 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 AGAP3Q96P47 875 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 C1QTNF1Q9BXJ1 281 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 NUSAP1Q9BXS6 441 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 PRRG4Q9BZD6 226 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CLPBQ9H078 707 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 VPS11Q9H270 941 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 AGO4Q9HCK5 861 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TMEM8AQ9HCN3 771 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ARHGEF38Q9NXL2 777 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CYP39A1Q9NYL5 469 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MARCH2Q9P0N8 246 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ERVW-1Q9UQF0 538 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC27A6Q9Y2P4 619 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 LTBP3Q9NS15 1303 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SMIM35A0A1B0GVV1 85 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 VSTM5A8MXK1 200 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC16A3O15427 465 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 P4HA2O15460 535 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RAMP2O60895 175 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CSDE1O75534 798 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 GRAP2O75791 330 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CRTAMO95727 393 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 HSPA4LO95757 839 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SERPINF2P08697 491 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ANXA5P08758 320 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ALADP13716 330 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 UBA1P22314 1058 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SHMT1P34896 483 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CTNNA1P35221 906 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SREBF1P36956 1147 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 INPP1P49441 399 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 PIGHQ14442 188 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SPDYAQ5MJ70 313 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SNAP47Q5SQN1 464 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ATG16L1Q676U5 607 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 PDE12Q6L8Q7 609 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MRNIPQ6NTE8 343 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ESRP1Q6NXG1 681 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TRIM65Q6PJ69 517 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 LINC00523Q86TU6 105 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TTC7BQ86TV6 843 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RNF135Q8IUD6 432 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ELOA2Q8IYF1 753 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SMYD4Q8IYR2 804 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TMEFF1Q8IYR6 380 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CCNYL1Q8N7R7 359 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 IPMKQ8NFU5 416 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 FAM76AQ8TAV0 307 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ZNF564Q8TBZ8 553 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 UBE2Q2Q8WVN8 375 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TRAPPC12Q8WVT3 735 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 COPS5Q92905 334 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SCLYQ96I15 445 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 OSBPL9Q96SU4 736 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 NELL2Q99435 816 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RAD9AQ99638 391 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CNPY3Q9BT09 278 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 EFHD1Q9BUP0 239 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ZMYND12Q9H0C1 365 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ARHGEF4Q9NR80 690 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CHCHD3Q9NX63 227 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 ADAMTS1Q9UHI8 967 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MTMR6Q9Y217 621 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TRAF3IP3Q9Y228 551 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC45A1Q9Y2W3 748 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 GPSM3Q9Y4H4 160 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 DTNAQ9Y4J8 743 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 FZD9O00144 591 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 HGSO14964 777 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RECQL4O94761 1208 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MLYCDO95822 493 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SLC10A3P09131 477 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SPATA31D3P0C874 917 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RBMS1P29558 406 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 OR1E1P30953 314 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 GPC1P35052 558 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CSE1LP55060 971 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 COPS2P61201 443 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 HTRA3P83110 453 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 GAD2Q05329 585 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 BST2Q10589 180 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TRIM60Q495X7 471 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 TCP11X2Q5H9J9 407 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 EOGTQ5NDL2 527 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 BROXQ5VW32 411 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 FAAH2Q6GMR7 532 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 GPAT2Q6NUI2 795 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 SPATA31D4Q6ZUB0 917 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 PLPPR4Q7Z2D5 763 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 RASAL3Q86YV0 1011 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 MCEMP1Q8IX19 187 aa3.04□□□□□ -1.92
SMCHD1-203ENST00000577880 CACNA2D3Q8IZS8 1091 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms