RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, human

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-208	ENST00000567250	CCDC186	Q7Z3E2	898 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	TADA2B	Q86TJ2	420 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	GJD3	Q8N144	294 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	SCAMP5	Q8TAC9	235 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	IPO4	Q8TEX9	1081 aa	Known RBP	12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	STK32A	Q8WU08	396 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	E2F7	Q96AV8	911 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	MCRS1	Q96EZ8	462 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	CDK5RAP1	Q96SZ6	601 aa	Known RBP	12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZSWIM1	Q9BR11	485 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	TRIM5	Q9C035	493 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	TTYH3	Q9C0H2	523 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	RBSN	Q9H1K0	784 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	LHX5	Q9H2C1	402 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	KIF9	Q9HAQ2	790 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	TRPC7	Q9HCX4	862 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	CNGB3	Q9NQW8	809 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	ST7	Q9NRC1	585 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	SCML2	Q9UQR0	700 aa		12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	KIF26A	Q9ULI4	1882 aa	Predicted RBP	12.82	□□□□□ -0.36
SF3B3-208	ENST00000567250	LRRC53	A6NM62	1247 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	MOSPD3	O75425	235 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	FBXO21	O94952	628 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	CKM	P06732	381 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	WEE1	P30291	646 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	GPD2	P43304	727 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	CDR2	Q01850	454 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	PTPN21	Q16825	1174 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	SFMBT2	Q5VUG0	894 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	TRIM72	Q6ZMU5	477 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	TMEM150A	Q86TG1	271 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	MON1A	Q86VX9	555 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	SCML4	Q8N228	414 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	TMEM35B	Q8NCS4	154 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	SLC35F5	Q8WV83	523 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	BAP1	Q92560	729 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	GOLGA1	Q92805	767 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	SMARCD2	Q92925	531 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	ASB16	Q96NS5	453 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	TRIM62	Q9BVG3	475 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	NACA2	Q9H009	215 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	MIS12	Q9H081	205 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	ACP6	Q9NPH0	428 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	USP3	Q9Y6I4	520 aa		12.81	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZNF840P	A6NDX5	716 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	DPYSL4	O14531	572 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZBED1	O96006	694 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ABL1	P00519	1130 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	CALCA	P01258	141 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	USP17L7	P0C7H9	530 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	RALA	P11233	206 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ARID5A	Q03989	594 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	PDCL	Q13371	301 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ASIC2	Q16515	512 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	STXBP5	Q5T5C0	1151 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	SNX30	Q5VWJ9	437 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	PPP1R2P3	Q6NXS1	205 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	PMF1	Q6P1K2	205 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	DENND1B	Q6P3S1	775 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	NOP9	Q86U38	636 aa	Known RBP	12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	PASD1	Q8IV76	773 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	VSTM4	Q8IW00	320 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	CMTM8	Q8IZV2	173 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	MAB21L3	Q8N8X9	362 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	C1orf131	Q8NDD1	294 aa	Known RBP	12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	DEPDC1B	Q8WUY9	529 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	IRGQ	Q8WZA9	623 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	SYNC	Q9H7C4	482 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	TRPV4	Q9HBA0	871 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZFP14	Q9HCL3	533 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	OBP2A	Q9NY56	170 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	GMIP	Q9P107	970 aa		12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	NOCT	Q9UK39	431 aa	Known RBP	12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	LUC7L2	Q9Y383	392 aa	Known RBP	12.8	□□□□□ -0.36
SF3B3-208	ENST00000567250	ANHX	E9PGG2	379 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	TULP2	O00295	520 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ECI2	O75521	394 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	GYPC	P04921	128 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZDHHC11B	P0C7U3	371 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	LCP1	P13796	627 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	CDH5	P33151	784 aa	Predicted RBP	12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	RGS7	P49802	495 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZBED6	P86452	979 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	GOLGA8F	Q08AF8	430 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	GOLGA8DP	Q0D2H9	430 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	HTR4	Q13639	388 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ZNF268	Q14587	947 aa	Predicted RBP	12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	HECTD3	Q5T447	861 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	TAF3	Q5VWG9	929 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	TXNDC8	Q6A555	127 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	PM20D1	Q6GTS8	502 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	VPS36	Q86VN1	386 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	GAS2L3	Q86XJ1	694 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	DDX1	Q92499	740 aa	Known RBP	12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	SYN2	Q92777	582 aa	Predicted RBP	12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ELSPBP1	Q96BH3	223 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	MRFAP1L1	Q96HT8	127 aa		12.79	□□□□□ -0.36
SF3B3-208	ENST00000567250	ULBP1	Q9BZM6	244 aa		12.79	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms