RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TMPRSS15P98073 1019 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 HSF5Q4G112 596 aaPredicted RBP13.77□□□□□ -0.21
CLN3-210ENST00000563874 CHSY1Q86X52 802 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 WDR49Q8IV35 697 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 ZNF518BQ9C0D4 1074 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 RAB6BQ9NRW1 208 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 STRIP2Q9ULQ0 834 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 LRCH1Q9Y2L9 728 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 TEX264Q9Y6I9 313 aa13.77□□□□□ -0.21
CLN3-210ENST00000563874 H7C0C1 242 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 PEX10O60683 326 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 TOP3BO95985 862 aaKnown RBP13.76□□□□□ -0.21
CLN3-210ENST00000563874 SKIP12755 728 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 ATP5OP48047 213 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 IRX4P78413 519 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 ROR1Q01973 937 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 BST1Q10588 318 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 CDO1Q16878 200 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 DUOXA2Q1HG44 320 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 SGSM1Q2NKQ1 1148 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 XRRA1Q6P2D8 792 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 SLC25A41Q8N5S1 370 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 PRPF31Q8WWY3 499 aaKnown RBP13.76□□□□□ -0.21
CLN3-210ENST00000563874 DDX50Q9BQ39 737 aaKnown RBP13.76□□□□□ -0.21
CLN3-210ENST00000563874 CNTN3Q9P232 1028 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 USP18Q9UMW8 372 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 COL4A5P29400 1685 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 SPATA31C2B4DYI2 1134 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 CDH6P55285 790 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 MAP3K10Q02779 954 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 SLC18A2Q05940 514 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 RBM15BQ8NDT2 890 aaKnown RBP13.76□□□□□ -0.21
CLN3-210ENST00000563874 PEBP4Q96S96 227 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 TUBB6Q9BUF5 446 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 ASCC2Q9H1I8 757 aaPredicted RBP13.76□□□□□ -0.21
CLN3-210ENST00000563874 KRT82Q9NSB4 513 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.76□□□□□ -0.21
CLN3-210ENST00000563874 HMGXB4Q9UGU5 601 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 ARID2Q68CP9 1835 aa13.76□□□□□ -0.21
CLN3-210ENST00000563874 ADCY3O60266 1144 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 GRAP2O75791 330 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 ATG7O95352 703 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 TGDSO95455 350 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 KCNA3P22001 575 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 POLR2BP30876 1174 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 HMGCS2P54868 508 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 ALDH18A1P54886 795 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 CHI3L2Q15782 390 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 CMPK2Q5EBM0 449 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 IRGCQ6NXR0 463 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 ZCCHC23Q6ZST2 131 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 STX18Q9P2W9 335 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 PCDHGC3Q9UN70 934 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 C2CD2Q9Y426 696 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 FAM189A1O60320 539 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 UBTFL6P0CB48 400 aaPredicted RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 CDH5P33151 784 aaPredicted RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 ABCD1P33897 745 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 YWHAEP62258 255 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 OCRLQ01968 901 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 TMEM132BQ14DG7 1078 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 SLC30A9Q6PML9 568 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 XYLT1Q86Y38 959 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 CCDC33Q8N5R6 958 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 PPFIBP2Q8ND30 876 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 SHKBP1Q8TBC3 707 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 TEPSINQ96N21 525 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 THTPAQ9BU02 230 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 PAPOLBQ9NRJ5 636 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 SCOCQ9UIL1 159 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 ZNF214Q9UL59 606 aaPredicted RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 EFR3BQ9Y2G0 817 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 HEY1Q9Y5J3 304 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 MAFBQ9Y5Q3 323 aaPredicted RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 I3L4J1 428 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 RNF8O76064 485 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 AQP5P55064 265 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 MRPS5P82675 430 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 LBRQ14739 615 aaKnown RBP13.75□□□□□ -0.21
CLN3-210ENST00000563874 KRT72Q14CN4 511 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 PRAMEF18Q5VWM3 479 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 SLC26A11Q86WA9 606 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 LRRC71Q8N4P6 559 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 TWNKQ96RR1 684 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 C20orf27Q9GZN8 174 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 XYLT2Q9H1B5 865 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 VCXQ9H320 206 aa13.75□□□□□ -0.21
CLN3-210ENST00000563874 DCAF8L1A6NGE4 600 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 KCNN4O15554 427 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 MAP3K7O43318 606 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 NPTXRO95502 500 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 APRTP07741 180 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 CNTN2Q02246 1040 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 KCNJ11Q14654 390 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 C15orf59Q2T9L4 293 aaPredicted RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 FAM102AQ5T9C2 384 aaPredicted RBP13.74□□□□□ -0.21
CLN3-210ENST00000563874 OR52E8Q6IFG1 317 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLN3-210ENST00000563874 SMC1BQ8NDV3 1235 aa13.74□□□□□ -0.21
CLN3-210ENST00000563874 CFAP61Q8NHU2 1237 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms