RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 HAPLN1P10915 354 aaPredicted RBP14.61□□□□□ -0.07
CLK3-209ENST00000562670 LCP1P13796 627 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 CYP2F1P24903 491 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 PSMA2P25787 234 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 FLT3P36888 993 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 NDUFV1P49821 464 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 SLC5A3P53794 718 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 CKAP4Q07065 602 aaKnown RBP14.61□□□□□ -0.07
CLK3-209ENST00000562670 RAB33AQ14088 237 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 CLUL1Q15846 466 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 BHLHA9Q7RTU4 235 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 GPRIN1Q7Z2K8 1008 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 PHLDB2Q86SQ0 1253 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 RHOT1Q8IXI2 618 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 VPS52Q8N1B4 723 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 ZNF461Q8TAF7 563 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 DDX23Q9BUQ8 820 aaKnown RBP14.61□□□□□ -0.07
CLK3-209ENST00000562670 ULBP1Q9BZM6 244 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 MRPL17Q9NRX2 175 aaKnown RBP14.61□□□□□ -0.07
CLK3-209ENST00000562670 TMEM51Q9NW97 253 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 RRN3Q9NYV6 651 aa14.61□□□□□ -0.07
CLK3-209ENST00000562670 TTC7AQ9ULT0 858 aaPredicted RBP14.61□□□□□ -0.07
CLK3-209ENST00000562670 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.61□□□□□ -0.07
CLK3-209ENST00000562670 LCHNA4D1U4 455 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 TMEM110-MUSTN1A8MSY1 372 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 SDC4P31431 198 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 CTNNB1P35222 781 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 GRIK1P39086 918 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 MATKP42679 507 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 TUFMP49411 452 aaKnown RBP14.6□□□□□ -0.07
CLK3-209ENST00000562670 PEX5P50542 639 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 RPL10AP62906 217 aaKnown RBP14.6□□□□□ -0.07
CLK3-209ENST00000562670 YWHAZP63104 245 aaKnown RBP14.6□□□□□ -0.07
CLK3-209ENST00000562670 ITIH3Q06033 890 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 C9orf50Q5SZB4 431 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 TRNP1Q6NT89 227 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 RNF19BQ6ZMZ0 732 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 BNIPLQ7Z465 357 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 RASGEF1CQ8N431 466 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 EMC1Q8N766 993 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 KLHL23Q8NBE8 558 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 ATAD1Q8NBU5 361 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 CLEC4CQ8WTT0 213 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 RXFP2Q8WXD0 754 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 CENPIQ92674 756 aaPredicted RBP14.6□□□□□ -0.07
CLK3-209ENST00000562670 NT5C3BQ969T7 300 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 RPGRIP1Q96KN7 1286 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 FBXO44Q9H4M3 255 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 POPDC2Q9HBU9 364 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 PACSIN2Q9UNF0 486 aaPredicted RBP14.6□□□□□ -0.07
CLK3-209ENST00000562670 PCDHA11Q9Y5I1 949 aa14.6□□□□□ -0.07
CLK3-209ENST00000562670 PLXNA4Q9HCM2 1894 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 PIK3R2O00459 728 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 KCNK3O14649 394 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 ADAM12O43184 909 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 LRCH4O75427 683 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 RNF8O76064 485 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 RTN3O95197 1032 aaPredicted RBP14.59□□□□□ -0.07
CLK3-209ENST00000562670 LTFP02788 710 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 ATF2P15336 505 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 PDGFRAP16234 1089 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 OR1D2P34982 312 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 NOS2P35228 1153 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 RWDD2BP57060 319 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 SLC25A11Q02978 314 aaKnown RBP14.59□□□□□ -0.07
CLK3-209ENST00000562670 STRADAQ7RTN6 431 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 CREG2Q8IUH2 290 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 KATNAL2Q8IYT4 538 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 NUP93Q8N1F7 819 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 CEP112Q8N8E3 955 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 ACTRT1Q8TDG2 376 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 ALG3Q92685 438 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 GDF15Q99988 308 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 TTLL2Q9BWV7 592 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.59□□□□□ -0.07
CLK3-209ENST00000562670 EHD2Q9NZN4 543 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 STAP1Q9ULZ2 295 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 SCML2Q9UQR0 700 aa14.59□□□□□ -0.07
CLK3-209ENST00000562670 ENDOD1O94919 500 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 KRT7P08729 469 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 TERF1P54274 439 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 SHHQ15465 462 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 TAF5Q15542 800 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 HADHQ16836 314 aaKnown RBP14.58□□□□□ -0.08
CLK3-209ENST00000562670 SLC25A52Q3SY17 297 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 CCDC14Q49A88 953 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 DCAF12L1Q5VU92 463 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 CC2D1AQ6P1N0 951 aaPredicted RBP14.58□□□□□ -0.08
CLK3-209ENST00000562670 TNS4Q8IZW8 715 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 ARHGAP18Q8N392 663 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 MNS1Q8NEH6 495 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 COG1Q8WTW3 980 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 KRT35Q92764 455 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 GOLGA1Q92805 767 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 FAM149B1Q96BN6 582 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 PGAP3Q96FM1 320 aaPredicted RBP14.58□□□□□ -0.08
CLK3-209ENST00000562670 PGLYRP2Q96PD5 576 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 TBCBQ99426 244 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 CRISPLD1Q9H336 500 aa14.58□□□□□ -0.08
CLK3-209ENST00000562670 DDX56Q9NY93 547 aaKnown RBP14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms