RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SEPT10Q9P0V9 454 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 TAGLN3Q9UI15 199 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 SHOC2Q9UQ13 582 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 APOBEC2Q9Y235 224 aaKnown RBP11.8□□□□□ -0.52
LDLR-208ENST00000558518 ZNF711Q9Y462 761 aa11.8□□□□□ -0.52
LDLR-208ENST00000558518 A0A0B4J269 797 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 IL1R2P27930 398 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SESN2P58004 480 aaPredicted RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 TMEM35BQ8NCS4 154 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 AVENQ9NQS1 362 aaPredicted RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.79□□□□□ -0.52
LDLR-208ENST00000558518 PLA2G4CQ9UP65 541 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SPATA31A5Q5VU36 1347 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SPATA31A6Q5VVP1 1343 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SPATA31A7Q8IWB4 1347 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 DCXO43602 365 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 ECE2O60344 883 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SERPINB5P36952 375 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 TNFSF9P41273 254 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 RGS7P49802 495 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 MRPS9P82933 396 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 ATG16L1Q676U5 607 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 TRMT10BQ6PF06 316 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 ERLEC1Q96DZ1 483 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 RIT2Q99578 217 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 C20orf27Q9GZN8 174 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 AGO4Q9HCK5 861 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 SMYD2Q9NRG4 433 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 PHLPP1O60346 1717 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 NHSL1Q5SYE7 1610 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 XPO1O14980 1071 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 TM9SF1O15321 606 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SOX11P35716 441 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 ROR1Q01973 937 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 ZNF252P-AS1Q0IIN9 211 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 PRKG1Q13976 671 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 NFIL3Q16649 462 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 ADGRD1Q6QNK2 874 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 HHIPL2Q6UWX4 724 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 MARK2Q7KZI7 788 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 ICA1LQ8NDH6 482 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 GATA6Q92908 595 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SKA1Q96BD8 255 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 WDR83Q9BRX9 315 aaKnown RBP11.79□□□□□ -0.52
LDLR-208ENST00000558518 KLHL4Q9C0H6 718 aa11.79□□□□□ -0.52
LDLR-208ENST00000558518 SIGLEC16A6NMB1 481 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 SLC26A4O43511 780 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 CDKN2BP42772 138 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 GCNT1Q02742 428 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 PRKD1Q15139 912 aaPredicted RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 EFHC1Q5JVL4 640 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 RBM44Q6ZP01 1051 aaKnown RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 WDR75Q8IWA0 830 aaKnown RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 MARK4Q96L34 752 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 PNPOQ9NVS9 261 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 ATP8B3O60423 1300 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 ITM2AO43736 263 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 ZBED1O96006 694 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 HNRNPCP07910 306 aaKnown RBP eCLIP11.78□□□□□ -0.521e-7■■■□□ 17.1
LDLR-208ENST00000558518 GTF2A2P52657 109 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 PKNOX1P55347 436 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 DPYSL3Q14195 570 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 C15orf59Q2T9L4 293 aaPredicted RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 FAM102AQ5T9C2 384 aaPredicted RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 MAP4K3Q8IVH8 894 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 MASTLQ96GX5 879 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 TRAPPC9Q96Q05 1148 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 PRPF18Q99633 342 aaKnown RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 RNPEPQ9H4A4 650 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 XPNPEP1Q9NQW7 623 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 TXNDC16Q9P2K2 825 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 ZNF541Q9H0D2 1346 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 SPDYE16A6NNV3 312 aaPredicted RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 HNRNPCL1O60812 293 aaKnown RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 SNRPAP09012 282 aaKnown RBP11.78□□□□□ -0.52
LDLR-208ENST00000558518 GRIA1P42261 906 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 CNGA3Q16281 694 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 OR6B2Q6IFH4 312 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 ZNRF3Q9ULT6 936 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 POLIQ9UNA4 740 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 INPP5FQ9Y2H2 1132 aa11.78□□□□□ -0.52
LDLR-208ENST00000558518 COL22A1Q8NFW1 1626 aaPredicted RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 TMEM191CA6NGB0 347 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 VNN1O95497 513 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 TMEM191BP0C7N4 346 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 FAM200BP0CF97 657 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 GALK1P51570 392 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 SLC5A9Q2M3M2 681 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 TRMT5Q32P41 509 aaKnown RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 DENND1BQ6P3S1 775 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 GMCL1P1Q8NEA9 526 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 MIPOL1Q8TD10 442 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 PPP4R1Q8TF05 950 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 TFAP2BQ92481 460 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 PPP2R3CQ969Q6 453 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 LIN28AQ9H9Z2 209 aaKnown RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 XAB2Q9HCS7 855 aaKnown RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 DMAP1Q9NPF5 467 aaPredicted RBP11.77□□□□□ -0.52
LDLR-208ENST00000558518 CYLDQ9NQC7 956 aa11.77□□□□□ -0.52
LDLR-208ENST00000558518 LMCD1Q9NZU5 365 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms