RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-223ENST00000557076 GPC3P51654 580 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 CLCN3P51790 818 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 PMS1P54277 932 aaKnown RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 SATB1Q01826 763 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 CREMQ03060 361 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 TROAPQ12815 778 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 SRSF5Q13243 272 aaKnown RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ITGB3BPQ13352 177 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 USP41Q3LFD5 358 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ANKRD39Q53RE8 183 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 DAB2IPQ5VWQ8 1189 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 MIS18BP1Q6P0N0 1132 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 C1orf228Q6PIY5 440 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 CEP68Q76N32 757 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ZNF589Q86UQ0 364 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 GGNQ86UU5 652 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 WDR5BQ86VZ2 330 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 CKAP2LQ8IYA6 745 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 COLGALT2Q8IYK4 626 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 URGCPQ8TCY9 931 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 FAM3CQ92520 227 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 LPPQ93052 612 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ELSPBP1Q96BH3 223 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ZC3H10Q96K80 434 aaKnown RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 MAP3K14Q99558 947 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 KXD1Q9BQD3 176 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 HERC2P3Q9BVR0 1158 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 GCOM2Q9BZD3 368 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 PLA2G2FQ9BZM2 168 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 INO80BQ9C086 356 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ZNF302Q9NR11 478 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 VPS45Q9NRW7 570 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 NRBP2Q9NSY0 501 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 PCDHA6Q9UN73 950 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 AKT3Q9Y243 479 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 INPP5FQ9Y2H2 1132 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 PCDHA8Q9Y5H6 950 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 ZNF462Q96JM2 2506 aa5.28□□□□□ -1.56
SCFD1-223ENST00000557076 MYH7P12883 1935 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 EIF4E1BA6NMX2 242 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 SHOXO15266 292 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 FGF10O15520 208 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 CSDE1O75534 798 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 TOP3BO95985 862 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 MX1P20591 662 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 FGFR4P22455 802 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 KIF5BP33176 963 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 NTHL1P78549 312 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 RTP5Q14D33 572 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 ZXDCQ2QGD7 858 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 LONRF3Q496Y0 759 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 VWA3BQ502W6 1294 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 DGKKQ5KSL6 1271 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 BICRALQ6AI39 1079 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 TWF2Q6IBS0 349 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 TANGO2Q6ICL3 276 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 NIPA1Q7RTP0 329 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 PROSER1Q86XN7 944 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 CCDC60Q8IWA6 550 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 TAB3Q8N5C8 712 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 ITFG1Q8TB96 612 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 OTUD7AQ8TE49 926 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 GAB3Q8WWW8 586 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 RRP36Q96EU6 259 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 LZTS2Q9BRK4 669 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 TRMT61BQ9BVS5 477 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 COLEC11Q9BWP8 271 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 SPZ1Q9BXG8 430 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 LY9Q9HBG7 655 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 UBN1Q9NPG3 1134 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 MARCH5Q9NX47 278 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 SUSD2Q9UGT4 822 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 NDRG2Q9UN36 371 aaKnown RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 PCDHB2Q9Y5E7 798 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 PCDHA10Q9Y5I2 948 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 PMF1-BGLAPU3KQ54 211 aa5.27□□□□□ -1.57
SCFD1-223ENST00000557076 USP9XQ93008 2570 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-223ENST00000557076 RALGAPA1Q6GYQ0 2036 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 CNTNAP2Q9UHC6 1331 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 DENND4AQ7Z401 1863 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 KNTC1P50748 2209 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 GON4LQ3T8J9 2241 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 C4orf47A7E2U8 309 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 AKAP3O75969 853 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 FOSP01100 380 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 POMCP01189 267 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 NCAM1P13591 858 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 SFPQP23246 707 aaKnown RBP eCLIP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 HOXA11P31270 313 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 DNM2P50570 870 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 DSC1Q08554 894 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 CCDC6Q16204 474 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 IMMTQ16891 758 aaKnown RBP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 PABPC1LQ4VXU2 614 aaKnown RBP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 PPM1LQ5SGD2 360 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 UBXN11Q5T124 520 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 HEATR6Q6AI08 1181 aaKnown RBP5.26□□□□□ -1.57
SCFD1-223ENST00000557076 C19orf48Q6RUI8 117 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 LIPIQ6XZB0 460 aa5.26□□□□□ -1.57
SCFD1-223ENST00000557076 KBTBD6Q86V97 674 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms