RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 HEXIM2Q96MH2 286 aaKnown RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 RNF157Q96PX1 679 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TBCBQ99426 244 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TRIM55Q9BYV6 548 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 MINDY3Q9H8M7 445 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 BATF3Q9NR55 127 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 HAO1Q9UJM8 370 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 ZNF180Q9UJW8 692 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 C2CD2Q9Y426 696 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PTPRFP10586 1907 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PAPPA2Q9BXP8 1791 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 DNAJC25-GNG10A0A024R161 153 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TCRBV9S1A1TA0A576 114 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 PEX10O60683 326 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 DESP17661 470 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 CLCN3P51790 818 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 HIRAP54198 1017 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 TRAPPC12Q8WVT3 735 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 RXFP2Q8WXD0 754 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 FAF2Q96CS3 445 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 SLC7A6OSQ96CW6 309 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 THOC1Q96FV9 657 aaKnown RBP14.07□□□□□ -0.16
SHMT2-222ENST00000555774 HPDLQ96IR7 371 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 NPHS2Q9NP85 383 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 ERAP1Q9NZ08 941 aa14.07□□□□□ -0.16
SHMT2-222ENST00000555774 KBTBD13C9JR72 458 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 KLF11O14901 512 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 DNAJC6O75061 913 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 SETSIPP0DME0 302 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 PDGFRAP16234 1089 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 ETV4P43268 484 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 RBP5P82980 135 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 ORC1Q13415 861 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 PRKG1Q13976 671 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 KRT81Q14533 505 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TMEM132DQ14C87 1099 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 AMHR2Q16671 573 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TAF1BQ53T94 588 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 SLC26A11Q86WA9 606 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 LRRC39Q96DD0 335 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 PDZD7Q9H5P4 517 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 IFT122Q9HBG6 1241 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 GBA2Q9HCG7 927 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 MTO1Q9Y2Z2 717 aaKnown RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 BCLAF3A2AJT9 711 aaKnown RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 H7C0C1 242 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TRDMT1O14717 391 aaKnown RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 APOL1O14791 398 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 GJB1P08034 283 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 ATP5OP48047 213 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 YWHAGP61981 247 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TTLL4Q14679 1199 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 KCTD2Q14681 263 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 CRYMQ14894 314 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TTC39BQ5VTQ0 682 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 OR6B2Q6IFH4 312 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 SH2D5Q6ZV89 423 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 FAM183BPQ6ZVS7 135 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 CLNKQ7Z7G1 428 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 CDR2LQ86X02 465 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 IGDCC3Q8IVU1 814 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TRIM42Q8IWZ5 723 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 GPC2Q8N158 579 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 LINC01465Q8N7H1 131 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 FBXO41Q8TF61 875 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 TSSK1BQ9BXA7 367 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 KLC2Q9H0B6 622 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 ASCC2Q9H1I8 757 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-222ENST00000555774 RNPEPL1Q9HAU8 725 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 USP29Q9HBJ7 922 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 SLC17A7Q9P2U7 560 aa14.06□□□□□ -0.16
SHMT2-222ENST00000555774 ZSWIM8A7E2V4 1837 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 CXCL11O14625 94 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 TOMM70O94826 608 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 IQCF3P0C7M6 154 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 CLNS1AP54105 237 aaKnown RBP14.05□□□□□ -0.16
SHMT2-222ENST00000555774 SNX16P57768 344 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 MMRN1Q13201 1228 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 KBTBD12Q3ZCT8 623 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 LGSNQ5TDP6 509 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 SLC9A4Q6AI14 798 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 NPNTQ6UXI9 565 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 DEFB132Q7Z7B7 95 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 PLCD3Q8N3E9 789 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 MMP19Q99542 508 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 NT5C1AQ9BXI3 368 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 TBC1D10AQ9BXI6 508 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 MKS1Q9NXB0 559 aa14.05□□□□□ -0.16
SHMT2-222ENST00000555774 COL1A2P08123 1366 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 DIAPH2O60879 1101 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 KRT37O76014 449 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 ZBTB7AO95365 584 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 LMNAP02545 664 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 TXNP10599 105 aaKnown RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 IBSPP21815 317 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 NDST1P52848 882 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 FAAP100Q0VG06 881 aa14.04□□□□□ -0.16
SHMT2-222ENST00000555774 PRKD1Q15139 912 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-222ENST00000555774 CTC1Q2NKJ3 1217 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms