RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CORO1BQ9BR76 489 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 NFKBIZQ9BYH8 718 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 TBC1D3BA6NDS4 549 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 SNHG28P0DPA3 235 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 NCAPHQ15003 741 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 TEKT4Q8WW24 435 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 PPWD1Q96BP3 646 aaKnown RBP14.75□□□□□ -0.05
COLCA1-204ENST00000540738 ZBTB45Q96K62 511 aaPredicted RBP14.75□□□□□ -0.05
COLCA1-204ENST00000540738 BRD8Q9H0E9 1235 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 CDT1Q9H211 546 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 CDC25CP30307 473 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 GTF2BQ00403 316 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 IL1RL1Q01638 556 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 MORF4L2Q15014 288 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 NUDCD3Q8IVD9 361 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 ZCCHC2Q9C0B9 1178 aaKnown RBP14.75□□□□□ -0.05
COLCA1-204ENST00000540738 ICAM3P32942 547 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 PPP1R16AQ96I34 528 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 ACO2Q99798 780 aaKnown RBP14.75□□□□□ -0.05
COLCA1-204ENST00000540738 COG4Q9H9E3 785 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 MARCH2Q9P0N8 246 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 AMACRQ9UHK6 382 aa14.75□□□□□ -0.05
COLCA1-204ENST00000540738 F8VZ95 297 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 H2AFYO75367 372 aaKnown RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 DARSP14868 501 aaKnown RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 EDEM1Q92611 657 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 VCPIP1Q96JH7 1222 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 FAM129AQ9BZQ8 928 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 FGFR1OP2Q9NVK5 253 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 AKAP7Q9P0M2 348 aaPredicted RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 L3MBTL1Q9Y468 752 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 AHDC1Q5TGY3 1603 aaPredicted RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 RHOBTB1O94844 696 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 PTK7Q13308 1070 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 ZNF606Q8WXB4 792 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 RBM15Q96T37 977 aaKnown RBP eCLIP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 TTPALQ9BTX7 342 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 TEX12Q9BXU0 123 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 CPSF2Q9P2I0 782 aaKnown RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 DERAQ9Y315 318 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 BAG2O95816 211 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 LTFP02788 710 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 HP1BP3Q5SSJ5 553 aaPredicted RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 NCLNQ969V3 563 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 THAP2Q9H0W7 228 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 MRPL40Q9NQ50 206 aaKnown RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 GIMAP4Q9NUV9 329 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 USP18Q9UMW8 372 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 PCDHA2Q9Y5H9 948 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 RBAK-RBAKDNI3L0D1 243 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 ATP9AO75110 1047 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 ATP1A1P05023 1023 aaKnown RBP14.74□□□□□ -0.05
COLCA1-204ENST00000540738 HDCP19113 662 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 CLEC16AQ2KHT3 1053 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 SH3D19Q5HYK7 790 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 WSCD1Q658N2 575 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 DDIASQ8IXT1 998 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 SPATA4Q8NEY3 305 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 ATXN7L3BQ96GX2 97 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 CARD9Q9H257 536 aa14.74□□□□□ -0.05
COLCA1-204ENST00000540738 LTN1O94822 1766 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 AOC2O75106 756 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 GYPCP04921 128 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SERPINF2P08697 491 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 OR1E1P30953 314 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CYP2C18P33260 490 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ATAT1Q5SQI0 421 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 MARC1Q5VT66 337 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SLC26A7Q8TE54 656 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SLC20A1Q8WUM9 679 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 POPDC2Q9HBU9 364 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CD274Q9NZQ7 290 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 DNMT3LQ9UJW3 386 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 NEU2Q9Y3R4 380 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SPACA6W5XKT8 324 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 FAM208AQ9UK61 1670 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SLURP2P0DP57 97 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CAPRIN1Q14444 709 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CASP8Q14790 479 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 LLGL2Q6P1M3 1020 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 PITPNM3Q9BZ71 974 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SLC13A1Q9BZW2 595 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TBC1D13Q9NVG8 400 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SLC39A10Q9ULF5 831 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 DRG1Q9Y295 367 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 LGR5O75473 907 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 CYP2A6P11509 494 aaPredicted RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 POLR2LP62875 67 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 ABHD15Q6UXT9 468 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TRMT10CQ7L0Y3 403 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 PPIL6Q8IXY8 311 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 LGI2Q8N0V4 545 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 LRRC52Q8N7C0 313 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 SNX31Q8N9S9 440 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TXLNGQ9NUQ3 528 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TRMT6Q9UJA5 497 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TTC31Q49AM3 519 aaPredicted RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 TFDP3Q5H9I0 405 aa14.73□□□□□ -0.05
COLCA1-204ENST00000540738 EARS2Q5JPH6 523 aaKnown RBP14.73□□□□□ -0.05
COLCA1-204ENST00000540738 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms