RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 PCDH11YQ9BZA8 1340 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 A0A1W2PPL8 197 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 DCLK1O15075 740 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 PRC1O43663 620 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 KIF20AO95235 890 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 KITP10721 976 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 PHKG2P15735 406 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 HMGB2P26583 209 aaKnown RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 VIPR2P41587 438 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 SEC24CP53992 1094 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 FMO1Q01740 532 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 PIGFQ07326 219 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 ZNF844Q08AG5 666 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 HLXQ14774 488 aaPredicted RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 KIAA0753Q2KHM9 967 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 CCDC157Q569K6 752 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 CC2D1BQ5T0F9 858 aaKnown RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 CCSAPQ6IQ19 270 aaPredicted RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 TAF2Q6P1X5 1199 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 PTF1AQ7RTS3 328 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 COLGALT2Q8IYK4 626 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 LNX2Q8N448 690 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 SLC44A3Q8N4M1 653 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 NSUN7Q8NE18 718 aaKnown RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 PJA1Q8NG27 643 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 GPR150Q8NGU9 434 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 NAF1Q96HR8 494 aaKnown RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 TRIB1Q96RU8 372 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 SIK2Q9H0K1 926 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 RIOX1Q9H6W3 641 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 SLAMF7Q9NQ25 335 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 TBCCD1Q9NVR7 557 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 COL20A1Q9P218 1284 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 HESX1Q9UBX0 185 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 TPCN1Q9ULQ1 816 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 EPN1Q9Y6I3 576 aaPredicted RBP4.57□□□□□ -1.68
NUP54-212ENST00000513248 LRRC37A3O60309 1634 aa4.57□□□□□ -1.68
NUP54-212ENST00000513248 KIF24Q5T7B8 1368 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 PARP4Q9UKK3 1724 aaKnown RBP4.56□□□□□ -1.68
NUP54-212ENST00000513248 ANO9A1A5B4 782 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CFAP69A5D8W1 941 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 TRIM43BA6NCK2 446 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 ZAR1LA6NP61 321 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 BTN3A1O00481 513 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 PROM1O43490 865 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CAND2O75155 1236 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 UNC5CO95185 931 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 GATA3P23771 443 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 PEX2P28328 305 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 SLC11A2P49281 568 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 WNT3P56703 355 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 C1QTNF8P60827 252 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 HTRA4P83105 476 aaPredicted RBP4.56□□□□□ -1.68
NUP54-212ENST00000513248 FOXI1Q12951 378 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CTBP1Q13363 440 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 MPP3Q13368 585 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CNGA2Q16280 664 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 SLC15A2Q16348 729 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 C1orf141Q5JVX7 400 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 SYCE2Q6PIF2 218 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CCDC149Q6ZUS6 474 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CLNKQ7Z7G1 428 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 SESTD1Q86VW0 696 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 ADGRG5Q8IZF4 528 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 NTN5Q8WTR8 489 aaPredicted RBP4.56□□□□□ -1.68
NUP54-212ENST00000513248 TRIM43Q96BQ3 446 aaPredicted RBP4.56□□□□□ -1.68
NUP54-212ENST00000513248 SUCLG2Q96I99 432 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 Q96MF0 132 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 HEPHQ9BQS7 1158 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 MESP1Q9BRJ9 268 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 SMOC2Q9H3U7 446 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CASS4Q9NQ75 786 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 TFCP2L1Q9NZI6 479 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 POLKQ9UBT6 870 aa4.56□□□□□ -1.68
NUP54-212ENST00000513248 CCNL1Q9UK58 526 aaPredicted RBP4.56□□□□□ -1.68
NUP54-212ENST00000513248 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.56□□□□□ -1.68
NUP54-212ENST00000513248 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.56□□□□□ -1.68
NUP54-212ENST00000513248 COL18A1P39060 1754 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 MAST3O60307 1309 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 KIF7Q2M1P5 1343 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 TRGV11A0A075B6L2 103 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 POLRMTO00411 1230 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 APAF1O14727 1248 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 ESRRBO95718 433 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 GNAI2P04899 355 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 SRGNP10124 158 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 TYRP1P17643 537 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 RPL17P18621 184 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 SUMO3P55854 103 aaPredicted RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 C21orf58P58505 322 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 RPS7P62081 194 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 EIF4A2Q14240 407 aaKnown RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 PLEKHO1Q53GL0 409 aaPredicted RBP4.55□□□□□ -1.68
NUP54-212ENST00000513248 KIAA0895LQ68EN5 471 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 Q6ZNX1 250 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 MICALCLQ6ZW33 695 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 GAS2L3Q86XJ1 694 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 PSD4Q8NDX1 1056 aa4.55□□□□□ -1.68
NUP54-212ENST00000513248 PHKBQ93100 1093 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms