RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 PNISRQ8TF01 805 aaKnown RBP6.2□□□□□ -1.42
NUP54-209ENST00000510569 CTHRC1Q96CG8 243 aa6.2□□□□□ -1.42
NUP54-209ENST00000510569 EFHD1Q9BUP0 239 aa6.2□□□□□ -1.42
NUP54-209ENST00000510569 TMEM60Q9H2L4 133 aa6.2□□□□□ -1.42
NUP54-209ENST00000510569 DNMT3BQ9UBC3 853 aaKnown RBP6.2□□□□□ -1.42
NUP54-209ENST00000510569 MBD3L4A6NDZ8 208 aaPredicted RBP6.19□□□□□ -1.42
NUP54-209ENST00000510569 MBD3L3A6NE82 208 aaPredicted RBP6.19□□□□□ -1.42
NUP54-209ENST00000510569 CES2O00748 559 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 SOCS2O14508 198 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 MT-CO3P00414 261 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 FGBP02675 491 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 ANAPC15P60006 121 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 LMAN2Q12907 356 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 SWSAP1Q6NVH7 229 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 SPSB4Q96A44 273 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 RUNDC1Q96C34 613 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 SUCLG2Q96I99 432 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 PPP1R9BQ96SB3 815 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 WACQ9BTA9 647 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 VN1R3Q9BXE9 311 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 TRIM36Q9NQ86 728 aa6.19□□□□□ -1.42
NUP54-209ENST00000510569 GAR1Q9NY12 217 aaKnown RBP6.19□□□□□ -1.42
NUP54-209ENST00000510569 RGS17Q9UGC6 210 aaPredicted RBP6.19□□□□□ -1.42
NUP54-209ENST00000510569 TRIM43BA6NCK2 446 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 DSCR3O14972 297 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 CD3EAPO15446 510 aaKnown RBP6.18□□□□□ -1.42
NUP54-209ENST00000510569 CCP110O43303 1012 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 SRGAP2O75044 1071 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 GCATO75600 419 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 APEHP13798 732 aaKnown RBP6.18□□□□□ -1.42
NUP54-209ENST00000510569 EPHA3P29320 983 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 SLC7A1P30825 629 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 UQCRC1P31930 480 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 LARS2Q15031 903 aaKnown RBP6.18□□□□□ -1.42
NUP54-209ENST00000510569 INSCQ1MX18 579 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 TMEM63BQ5T3F8 832 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 ZDHHC24Q6UX98 284 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 MRPL10Q7Z7H8 261 aaKnown RBP6.18□□□□□ -1.42
NUP54-209ENST00000510569 NANOGP1Q8N7R0 232 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 C16orf52Q8NHV5 167 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 TRIM43Q96BQ3 446 aaPredicted RBP6.18□□□□□ -1.42
NUP54-209ENST00000510569 CCDC17Q96LX7 622 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 C22orf23Q9BZE7 217 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 SNX15Q9NRS6 342 aa6.18□□□□□ -1.42
NUP54-209ENST00000510569 CAPN8A6NHC0 703 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 FAM227AF5H4B4 570 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 FRS3O43559 492 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 KLRC1P26715 233 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 PRKAR1BP31321 381 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 DIO1P49895 249 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 TIRAPP58753 221 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 HTRA4P83105 476 aaPredicted RBP6.17□□□□□ -1.42
NUP54-209ENST00000510569 DENND2CQ68D51 928 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 KIAA0319LQ8IZA0 1049 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 STK32BQ9NY57 414 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 ZIM2Q9NZV7 527 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 USP22Q9UPT9 525 aa6.17□□□□□ -1.42
NUP54-209ENST00000510569 LY6G6EA0A0G2JKS1 128 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 LOC102723971A0A1B0GUV8 181 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 SPRY2O43597 315 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 MARCH6O60337 910 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 MYBP10242 640 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 HOXB6P17509 224 aaKnown RBP6.16□□□□□ -1.42
NUP54-209ENST00000510569 THBS4P35443 961 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 SRSF1Q07955 248 aaKnown RBP eCLIP6.16□□□□□ -1.427e-7■□□□□ 8.2
NUP54-209ENST00000510569 FHL1Q13642 323 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 TWIST1Q15672 202 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 C10orf25Q5T742 122 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 CXorf57Q6NSI4 855 aaKnown RBP6.16□□□□□ -1.42
NUP54-209ENST00000510569 APOA5Q6Q788 366 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 SHC4Q6S5L8 630 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 ZNF517Q6ZMY9 492 aaPredicted RBP6.16□□□□□ -1.42
NUP54-209ENST00000510569 NRACQ8N912 160 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 CUL5Q93034 780 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 WDYHV1Q96HA8 205 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 DHX36Q9H2U1 1008 aaKnown RBP6.16□□□□□ -1.42
NUP54-209ENST00000510569 LPAR3Q9UBY5 353 aa6.16□□□□□ -1.42
NUP54-209ENST00000510569 H3BNC9 293 aa6.15□□□□□ -1.42
NUP54-209ENST00000510569 RRP9O43818 475 aaKnown RBP6.15□□□□□ -1.42
NUP54-209ENST00000510569 MTHFSP49914 203 aa6.15□□□□□ -1.42
NUP54-209ENST00000510569 POLGP54098 1239 aaPredicted RBP6.15□□□□□ -1.42
NUP54-209ENST00000510569 GHRHRQ02643 423 aa6.15□□□□□ -1.42
NUP54-209ENST00000510569 CACHD1Q5VU97 1274 aa6.15□□□□□ -1.42
NUP54-209ENST00000510569 OSR1Q8TAX0 266 aaPredicted RBP6.15□□□□□ -1.42
NUP54-209ENST00000510569 NMD3Q96D46 503 aaKnown RBP6.15□□□□□ -1.42
NUP54-209ENST00000510569 USP19O94966 1318 aa6.15□□□□□ -1.43
NUP54-209ENST00000510569 ISM1B1AKI9 464 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 PYCARD-AS1I3L0S3 204 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 TMPRSS11DO60235 418 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 CTNND1O60716 968 aaKnown RBP6.14□□□□□ -1.43
NUP54-209ENST00000510569 RNF8O76064 485 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 RASAL1O95294 804 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 COPB1P53618 953 aaKnown RBP6.14□□□□□ -1.43
NUP54-209ENST00000510569 LRRC41Q15345 812 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 ZNF260Q3ZCT1 412 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 AWAT1Q58HT5 328 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 DEF8Q6ZN54 512 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 KCTD20Q7Z5Y7 419 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 LIX1LQ8IVB5 337 aa6.14□□□□□ -1.43
NUP54-209ENST00000510569 CHPFQ8IZ52 775 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms