RNA–Protein interactions for RNA: ENST00000504195.1

HMGB3P17-201, Transcript of high mobility group box 3 pseudogene 17, humanhuman

BASIC

Gene HMGB3P17, Length 649 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P17-201ENST00000504195 ZNF548Q8NEK5 533 aaPredicted RBP2.58□□□□□ -2
HMGB3P17-201ENST00000504195 OSCP1Q8WVF1 389 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 SOCS4Q8WXH5 440 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 MTFMTQ96DP5 389 aaKnown RBP2.58□□□□□ -2
HMGB3P17-201ENST00000504195 PSMD1Q99460 953 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 POLR3GLQ9BT43 218 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 THAP7Q9BT49 309 aaPredicted RBP2.58□□□□□ -2
HMGB3P17-201ENST00000504195 CIPCQ9C0C6 399 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 NDRG4Q9ULP0 352 aaKnown RBP2.58□□□□□ -2
HMGB3P17-201ENST00000504195 GABRQQ9UN88 632 aa2.58□□□□□ -2
HMGB3P17-201ENST00000504195 MYO1CO00159 1063 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 IGSF3O75054 1194 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 KATNA1O75449 491 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 FGF3P11487 239 aaPredicted RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 CYP2C9P11712 490 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 MYCLP12524 364 aaPredicted RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 XRCC6P12956 609 aaKnown RBP eCLIP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 PHKG2P15735 406 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 NCLP19338 710 aaKnown RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 RECQLP46063 649 aaPredicted RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 MAP2K6P52564 334 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 SOX8P57073 446 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 DDR1Q08345 913 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 DEPDC1Q5TB30 811 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 UBE2Q1Q7Z7E8 422 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 MMP21Q8N119 569 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 PRR18Q8N4B5 295 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 SLC35A4Q96G79 324 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 ZNF479Q96JC4 524 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 CCDC17Q96LX7 622 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 CAMK1GQ96NX5 476 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 LENG8Q96PV6 779 aaPredicted RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 MRPL44Q9H9J2 332 aaKnown RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 SARS2Q9NP81 518 aaKnown RBP2.57□□□□□ -2
HMGB3P17-201ENST00000504195 SPEF1Q9Y4P9 236 aa2.57□□□□□ -2
HMGB3P17-201ENST00000504195 TCRBV5S1A1TA0A578 114 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 ALG1L2C9J202 215 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 hCG_1984214I3L0E3 225 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 PSMD9O00233 223 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 TBC1D4O60343 1298 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 GCATO75600 419 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 SNUPNO95149 360 aaKnown RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 ZRANB2O95218 330 aaKnown RBP eCLIP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 HDCP19113 662 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 PTMSP20962 102 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 MCCP23508 829 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 KCNJ4P48050 445 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 CDKN1CP49918 316 aaPredicted RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 ALDH5A1P51649 535 aaPredicted RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 PGGT1BP53609 377 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 KRTAP10-3P60369 221 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 E2F1Q01094 437 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 FAM50AQ14320 339 aaKnown RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 PLS1Q14651 629 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 INPP5JQ15735 1006 aaPredicted RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 PGS1Q32NB8 556 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 MGAT5BQ3V5L5 792 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 KHDC1LQ5JSQ8 128 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 RNF187Q5TA31 235 aaPredicted RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 BSPRYQ5W0U4 402 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 CAND1Q86VP6 1230 aaKnown RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 SIRT6Q8N6T7 355 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 WFIKKN2Q8TEU8 576 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 WBP2Q969T9 261 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 CDK5RAP3Q96JB5 506 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 CNNM1Q9NRU3 951 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 TMEM184CQ9NVA4 438 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 XPR1Q9UBH6 696 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 AMFRQ9UKV5 643 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 MAFFQ9ULX9 164 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 MRPS17Q9Y2R5 130 aaKnown RBP2.56□□□□□ -2
HMGB3P17-201ENST00000504195 TMX2Q9Y320 296 aa2.56□□□□□ -2
HMGB3P17-201ENST00000504195 IGLV5-39A0A0G2JS06 123 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 AP4M1O00189 453 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 TNKSO95271 1327 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 IL33O95760 270 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 PLGP00747 810 aaPredicted RBP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 THP07101 528 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 POU2F2P09086 479 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 CTSAP10619 480 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 FPR3P25089 353 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 THBS4P35443 961 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 CXCR3P49682 368 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 PRKAG1P54619 331 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 GAS1P54826 345 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 WNT3P56703 355 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 SUMO2P61956 95 aaKnown RBP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 KRT17Q04695 432 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 MYO1EQ12965 1108 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 ARID4BQ4LE39 1312 aaPredicted RBP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 BCDIN3DQ7Z5W3 292 aaKnown RBP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 SFTPA1Q8IWL2 248 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 IZUMO1Q8IYV9 350 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 ABRAQ8N0Z2 381 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 MAP4K1Q92918 833 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 RSPRY1Q96DX4 576 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 NLRP4Q96MN2 994 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 MMS19Q96T76 1030 aa2.55□□□□□ -2
HMGB3P17-201ENST00000504195 NTPCRQ9BSD7 190 aaKnown RBP2.55□□□□□ -2
HMGB3P17-201ENST00000504195 CXorf36Q9H7Y0 433 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 127 ms