RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 USP20Q9Y2K6 914 aa12.12□□□□□ -0.47
BRCA1-222ENST00000493919 TLL1O43897 1013 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DGKIO75912 1065 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 SEC24DO94855 1032 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 KRT10P13645 584 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 CASP1P29466 404 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 CBX5P45973 191 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 ASIC1P78348 528 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 NR1D2Q14995 579 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 TTC23LQ6PF05 361 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 SFR1Q86XK3 245 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 FAM178BQ8IXR5 827 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 CADM3Q8N126 398 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 LRRN4CLQ8ND94 238 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 PHOSPHO2Q8TCD6 241 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 YME1L1Q96TA2 773 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 PBX4Q9BYU1 374 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DNAJC25Q9H1X3 360 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 BLZF1Q9H2G9 400 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 MAGEF1Q9HAY2 307 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 RGS18Q9NS28 235 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 C1orf112Q9NSG2 853 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 PRMT7Q9NVM4 692 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 KBTBD4Q9NVX7 518 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DACT1Q9NYF0 836 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 PFDN2Q9UHV9 154 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 K7ERI5 159 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 ZW10O43264 779 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 RNGTTO60942 597 aaKnown RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 GJB5O95377 273 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 MYOGP15173 224 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 ARF4P18085 180 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DNAJB2P25686 324 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 SARSP49591 514 aaKnown RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 EFNA5P52803 228 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 GSDMDP57764 484 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 LRRC74AQ0VAA2 488 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 LSAMPQ13449 338 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DSC3Q14574 896 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 PPP1R7Q15435 360 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 AMHR2Q16671 573 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 LACTB2Q53H82 288 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 NOTUMQ6P988 496 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 SLC24A5Q71RS6 500 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 BBOF1Q8ND07 529 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 HAUS1Q96CS2 278 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 DNAJC19Q96DA6 116 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 HIC2Q96JB3 615 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 HAPLN3Q96S86 360 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 TRIM9Q9C026 710 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 CYP4F11Q9HBI6 524 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 ARHGAP28Q9P2N2 729 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 AGO2Q9UKV8 859 aaKnown RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 GPC6Q9Y625 555 aaPredicted RBP12.11□□□□□ -0.47
BRCA1-222ENST00000493919 EYSQ5T1H1 3165 aa12.11□□□□□ -0.47
BRCA1-222ENST00000493919 CNTNAP2Q9UHC6 1331 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 A0A0J9YVX5 310 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 TTLL13PA6NNM8 815 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 C9IYK1 514 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 GADD45BO75293 160 aaPredicted RBP12.1□□□□□ -0.47
BRCA1-222ENST00000493919 EDN1P05305 212 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 RAC2P15153 192 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 HMOX2P30519 316 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 EVI2BP34910 448 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 PLTPP55058 493 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 SMAD3P84022 425 aaKnown RBP12.1□□□□□ -0.47
BRCA1-222ENST00000493919 STRN3Q13033 797 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 PCBP1Q15365 356 aaKnown RBP eCLIP12.1□□□□□ -0.47
BRCA1-222ENST00000493919 TMEM95Q3KNT9 176 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 SYCP2LQ5T4T6 812 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 PALB2Q86YC2 1186 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 NPAS4Q8IUM7 802 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 TOP1MTQ969P6 601 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 ERP44Q9BS26 406 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 VPS16Q9H269 839 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 FZD8Q9H461 694 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 CHST12Q9NRB3 414 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 FAM105AQ9NUU6 356 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 PANK4Q9NVE7 773 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 EMC3Q9P0I2 261 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 EPS15L1Q9UBC2 864 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 MSRAQ9UJ68 235 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 PCDHB7Q9Y5E2 793 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 TTC3P53804 2025 aa12.1□□□□□ -0.47
BRCA1-222ENST00000493919 FAM237AA0A1B0GTK4 181 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 CARNS1A5YM72 827 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 USP27XA6NNY8 438 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 NOTOA8MTQ0 251 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 FAM47E-STBD1D6RA91 191 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 SPTLC1O15269 473 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 GUCY1B2O75343 617 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 OXSR1O95747 527 aaPredicted RBP12.09□□□□□ -0.47
BRCA1-222ENST00000493919 STAG3L1P0CL83 205 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 CCDC192P0DO97 292 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 NAGAP17050 411 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 CFL1P23528 166 aaKnown RBP12.09□□□□□ -0.47
BRCA1-222ENST00000493919 CCND1P24385 295 aa12.09□□□□□ -0.47
BRCA1-222ENST00000493919 NMT1P30419 496 aaKnown RBP12.09□□□□□ -0.47
BRCA1-222ENST00000493919 HOXA11P31270 313 aaPredicted RBP12.09□□□□□ -0.47
BRCA1-222ENST00000493919 GBP1P32455 592 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms