RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 KRT39Q6A163 491 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 FILIP1Q7Z7B0 1213 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 LONP2Q86WA8 852 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 CCDC150Q8NCX0 1101 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 CSNK1G1Q9HCP0 422 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 GMIPQ9P107 970 aa24.37■■□□□ 1.49
COL9A3-213ENST00000489045 CHORDC1Q9UHD1 332 aaPredicted RBP24.37■■□□□ 1.49
COL9A3-213ENST00000489045 SCAMP3O14828 347 aaKnown RBP24.36■■□□□ 1.49
COL9A3-213ENST00000489045 COCHO43405 550 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 SMC2O95347 1197 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 FAM200BP0CF97 657 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 CD58P19256 250 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 TRIM21P19474 475 aaKnown RBP24.36■■□□□ 1.49
COL9A3-213ENST00000489045 GTF2H1P32780 548 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 LPAL2Q16609 132 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 COBLL1Q53SF7 1204 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 SECISBP2LQ93073 1101 aaKnown RBP24.36■■□□□ 1.49
COL9A3-213ENST00000489045 SMARCE1Q969G3 411 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 NT5C1AQ9BXI3 368 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 COMMD8Q9NX08 183 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 CFAP97Q9P2B7 532 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 PCDHA5Q9Y5H7 936 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 EML5Q05BV3 1969 aa24.36■■□□□ 1.49
COL9A3-213ENST00000489045 CEP250Q9BV73 2442 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 FAM92AA1XBS5 289 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 ATG13O75143 517 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 CILPO75339 1184 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 ID4P47928 161 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 MXI1P50539 228 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 SRSF5Q13243 272 aaKnown RBP24.35■■□□□ 1.49
COL9A3-213ENST00000489045 HECTD3Q5T447 861 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 SNX30Q5VWJ9 437 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 PRR23BQ6ZRT6 265 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 DDX42Q86XP3 938 aaKnown RBP eCLIP24.35■■□□□ 1.49
COL9A3-213ENST00000489045 KIAA1958Q8N8K9 716 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 SPATA20Q8TB22 786 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 EZH1Q92800 747 aaPredicted RBP24.35■■□□□ 1.49
COL9A3-213ENST00000489045 SEMA4DQ92854 862 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 TIGD1Q96MW7 591 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 TSG101Q99816 390 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 CCSER2Q9H7U1 834 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 RAB23Q9ULC3 237 aa24.35■■□□□ 1.49
COL9A3-213ENST00000489045 HRO43593 1189 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 CYP17A1P05093 508 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 ZDHHC11BP0C7U3 371 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 HOXA6P31267 233 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 FBXO43Q4G163 708 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 CLEC20AQ6ZU45 233 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 FBXL13Q8NEE6 735 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 WHAMMQ8TF30 809 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 JAKMIP2Q96AA8 810 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 CYFIP2Q96F07 1278 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 ZFRQ96KR1 1074 aaKnown RBP24.34■■□□□ 1.49
COL9A3-213ENST00000489045 HNRNPABQ99729 332 aaKnown RBP24.34■■□□□ 1.49
COL9A3-213ENST00000489045 GMEB2Q9UKD1 530 aa24.34■■□□□ 1.49
COL9A3-213ENST00000489045 SLC9A3R1O14745 358 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 SLC16A3O15427 465 aaKnown RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 STX10O60499 249 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 CNR2P34972 360 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 OPRD1P41143 372 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 TUBP50607 506 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 PMS1P54277 932 aaKnown RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 GAB4Q2WGN9 574 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 ANKRD40Q6AI12 368 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 GPRIN1Q7Z2K8 1008 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 WDR5BQ86VZ2 330 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 ZC3H3Q8IXZ2 948 aaKnown RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 RPLP0P6Q8NHW5 317 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 FBXO44Q9H4M3 255 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 POLR3BQ9NW08 1133 aaPredicted RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 HOOK1Q9UJC3 728 aaKnown RBP24.33■■□□□ 1.49
COL9A3-213ENST00000489045 SLC8A2Q9UPR5 921 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 DCHS1Q96JQ0 3298 aa24.33■■□□□ 1.49
COL9A3-213ENST00000489045 SPAG17Q6Q759 2223 aa24.33■■□□□ 1.48
COL9A3-213ENST00000489045 RALGAPA1Q6GYQ0 2036 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 TRIM49BA6NDI0 452 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 PXNP49023 591 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-213ENST00000489045 PGFP49763 221 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 SIM2Q14190 667 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-213ENST00000489045 DCAF17Q5H9S7 520 aaPredicted RBP24.32■■□□□ 1.48
COL9A3-213ENST00000489045 TCERG1LQ5VWI1 586 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 LAIR1Q6GTX8 287 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 ADGRG2Q8IZP9 1017 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 RAB20Q9NX57 234 aa24.32■■□□□ 1.48
COL9A3-213ENST00000489045 HHLA1C9JL84 531 aa24.31■■□□□ 1.48
COL9A3-213ENST00000489045 FKBP3Q00688 224 aaKnown RBP24.31■■□□□ 1.48
COL9A3-213ENST00000489045 DHCR24Q15392 516 aa24.31■■□□□ 1.48
COL9A3-213ENST00000489045 ZNF394Q53GI3 561 aa24.31■■□□□ 1.48
COL9A3-213ENST00000489045 RMDN1Q96DB5 314 aa24.31■■□□□ 1.48
COL9A3-213ENST00000489045 GTPBP4Q9BZE4 634 aaKnown RBP24.31■■□□□ 1.48
COL9A3-213ENST00000489045 DNAI2Q9GZS0 605 aa24.31■■□□□ 1.48
COL9A3-213ENST00000489045 TLR8Q9NR97 1041 aaKnown RBP24.31■■□□□ 1.48
COL9A3-213ENST00000489045 E2F8A0AVK6 867 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 TLR5O60602 858 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 LRRC63Q05C16 580 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 CBWD6Q4V339 395 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 CBWD3Q5JTY5 395 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 CBWD5Q5RIA9 395 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 ISM2Q6H9L7 571 aa24.3■■□□□ 1.48
COL9A3-213ENST00000489045 FAXDC2Q96IV6 333 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms