RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NUMBLQ9Y6R0 609 aa8.5□□□□□ -1.05
USP40-216ENST00000485943 RNF223E7ERA6 249 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 NCAM2O15394 837 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 HCRTO43612 131 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 LRRN2O75325 713 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CILPO75339 1184 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 MICAL2O94851 1124 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CAVIN2O95810 425 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CCDC172P0C7W6 258 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 MBL2P11226 248 aaPredicted RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 VDRP11473 427 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 DESP17661 470 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 ATF6P18850 670 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 HDCP19113 662 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 ACO1P21399 889 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 GDI1P31150 447 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 KRT9P35527 623 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 IFNAR2P48551 515 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 BCAT1P54687 386 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 MARSP56192 900 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 BPIFB4P59827 614 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 SH3BP2P78314 561 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 UBXN1Q04323 297 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 SIGLEC14Q08ET2 396 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 GOLGA7BQ2TAP0 167 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 TCP11X2Q5H9J9 407 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 BPHLQ86WA6 291 aaPredicted RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 DDX42Q86XP3 938 aaKnown RBP eCLIP8.49□□□□□ -1.05
USP40-216ENST00000485943 ZC3H3Q8IXZ2 948 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 ARHGAP18Q8N392 663 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CELF5Q8N6W0 485 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 PLPP7Q8NBV4 271 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 RBBP8NLQ8NC74 664 aaPredicted RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 ST13P5Q8NFI4 369 aaPredicted RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 NEK11Q8NG66 645 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 RNF139Q8WU17 664 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 SEMA4DQ92854 862 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 IRF7Q92985 503 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 TCEAL4Q96EI5 215 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 SPATA17Q96L03 361 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 C8orf48Q96LL4 319 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CDK5RAP1Q96SZ6 601 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 RTP3Q9BQQ7 232 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 LSM14BQ9BX40 385 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 B3GNT5Q9BYG0 378 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 KIF9Q9HAQ2 790 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 AVENQ9NQS1 362 aaPredicted RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 SEPT11Q9NVA2 429 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 APEX2Q9UBZ4 518 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 KIAA1257Q9ULG3 409 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 CA14Q9ULX7 337 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 MRPS17Q9Y2R5 130 aaKnown RBP8.49□□□□□ -1.05
USP40-216ENST00000485943 SH3BP1Q9Y3L3 701 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 DOCK6Q96HP0 2047 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 MYO16Q9Y6X6 1858 aa8.49□□□□□ -1.05
USP40-216ENST00000485943 GTPBP10A4D1E9 387 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 FAM86C2PA6NEL3 165 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 ECI2O75521 394 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 PAEPP09466 180 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 TPM1P09493 284 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 SRFP11831 508 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 NPR3P17342 541 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 PSMC3P17980 439 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 GNA15P30679 374 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 SLC5A3P53794 718 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 ZXDAP98168 799 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 GCNT1Q02742 428 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 INCA1Q0VD86 236 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 BST2Q10589 180 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 TAF10Q12962 218 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 ELOAQ14241 798 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 GRM2Q14416 872 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 SLC5A9Q2M3M2 681 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 PPP1R26Q5T8A7 1209 aaPredicted RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 TRIM65Q6PJ69 517 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 PARM1Q6UWI2 310 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 FMNL3Q8IVF7 1028 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 ARID3BQ8IVW6 561 aaPredicted RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 CMTM8Q8IZV2 173 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 SIX5Q8N196 739 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 C12orf29Q8N999 325 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 CXorf38Q8TB03 319 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 SHKBP1Q8TBC3 707 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 BPIFB1Q8TDL5 484 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 IPO4Q8TEX9 1081 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 RSAD2Q8WXG1 361 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 EDAQ92838 391 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 ELSPBP1Q96BH3 223 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 TRMT2BQ96GJ1 504 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 HNRNPABQ99729 332 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 GZF1Q9H116 711 aaPredicted RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 SDCBP2Q9H190 292 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 CRISPLD1Q9H336 500 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 APOBEC3GQ9HC16 384 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 SAMSN1Q9NSI8 373 aaKnown RBP8.48□□□□□ -1.05
USP40-216ENST00000485943 FANCLQ9NW38 375 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 COMMD8Q9NX08 183 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 TMEM63CQ9P1W3 806 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 HMGXB4Q9UGU5 601 aa8.48□□□□□ -1.05
USP40-216ENST00000485943 NAGPAQ9UK23 515 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms