RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 GJA10Q969M2 543 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 HGH1Q9BTY7 390 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 WNT8AQ9H1J5 351 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 CPVLQ9H3G5 476 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 COPS7BQ9H9Q2 264 aaPredicted RBP4.4□□□□□ -1.71
VPS50-210ENST00000471188 KCNK13Q9HB14 408 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 MAN1C1Q9NR34 630 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 ARHGEF4Q9NR80 690 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 LRRC4BQ9NT99 713 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 HACD3Q9P035 362 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 MAP10Q9P2G4 905 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 SSX2IPQ9Y2D8 614 aa4.4□□□□□ -1.71
VPS50-210ENST00000471188 CCDC88AQ3V6T2 1871 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TECPR2O15040 1411 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 A0A088AWK7 358 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TMX2-CTNND1H3BSU7 103 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PSMD11O00231 422 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 AP1G1O43747 822 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TYROBPO43914 113 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 BAIAP3O94812 1187 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MCF2P10911 925 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 JAK1P23458 1154 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 ANXA13P27216 316 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 HSPA1LP34931 641 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MSX2P35548 267 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 IREB2P48200 963 aaKnown RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 TPTEP56180 551 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 RAB15P59190 212 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MRPS22P82650 360 aaKnown RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 GNA12Q03113 381 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 BNIP3Q12983 259 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SNAPC2Q13487 334 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PEX6Q13608 980 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CCNIQ14094 377 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CARTPTQ16568 116 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 NDUFA5Q16718 116 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TIGD2Q4W5G0 525 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 KAZNQ674X7 775 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SPOPLQ6IQ16 392 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CCSAPQ6IQ19 270 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 TMC5Q6UXY8 1006 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TPTE2Q6XPS3 522 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 GPBP1Q86WP2 473 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 BBOF1Q8ND07 529 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SCFD1Q8WVM8 642 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 IP6K1Q92551 441 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 C12orf43Q96C57 262 aaKnown RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 ZNF512Q96ME7 567 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 BIRC8Q96P09 236 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PNMA5Q96PV4 448 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 RNF38Q9H0F5 515 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 VPS11Q9H270 941 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SNX25Q9H3E2 840 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 LRRC19Q9H756 370 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PLK2Q9NYY3 685 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PKD2L1Q9P0L9 805 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 ZNHIT2Q9UHR6 403 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SATB2Q9UPW6 733 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 NCANO14594 1321 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 A0A1W2PPW3 197 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CCDC162PA2VCL2 907 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SMCO2A6NFE2 343 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TMEM114B3SHH9 223 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 E9PMD0 336 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 H0YIN7 160 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TP73O15350 636 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TEX28O15482 410 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 AQP9O43315 295 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 DENRO43583 198 aaKnown RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 CYTH3O43739 400 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 GUCY1B2O75343 617 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 BANF1O75531 89 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 ZMPSTE24O75844 475 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SEC24DO94855 1032 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 NCF2P19878 526 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 RPA1P27694 616 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MAN1A1P33908 653 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CASP4P49662 377 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CASP5P51878 434 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 NKX2-5P52952 324 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 COPAP53621 1224 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 RALGDSQ12967 914 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 E2F2Q14209 437 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 PHKG1Q16816 387 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 ZNF568Q3ZCX4 644 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 RSBN1LQ6PCB5 846 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 CENPUQ71F23 418 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 RSPH3Q86UC2 560 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 TTC30AQ86WT1 665 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MCF2L2Q86YR7 1114 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 CRLF3Q8IUI8 442 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.39□□□□□ -1.71
VPS50-210ENST00000471188 Q8N9G6 341 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 ZNF564Q8TBZ8 553 aaPredicted RBP4.39□□□□□ -1.71
VPS50-210ENST00000471188 GRIN3AQ8TCU5 1115 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 SLC20A1Q8WUM9 679 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 MECRQ9BV79 373 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 HERC2P3Q9BVR0 1158 aa4.39□□□□□ -1.71
VPS50-210ENST00000471188 FAM117AQ9C073 453 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms