RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TUBP50607 506 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 HTR4Q13639 388 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 FAM78AQ5JUQ0 283 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 TXNDC8Q6A555 127 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 GPRIN1Q7Z2K8 1008 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 CMTM8Q8IZV2 173 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 MSANTD4Q8NCY6 345 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 EPS8L1Q8TE68 723 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 GOLGA1Q92805 767 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 ELSPBP1Q96BH3 223 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 CDK5RAP1Q96SZ6 601 aaKnown RBP20.84■□□□□ 0.93
COL9A3-204ENST00000463487 XPO4Q9C0E2 1151 aaKnown RBP20.84■□□□□ 0.93
COL9A3-204ENST00000463487 NACA2Q9H009 215 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 ACP6Q9NPH0 428 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 CYLDQ9NQC7 956 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 GMIPQ9P107 970 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 SORCS3Q9UPU3 1222 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 USP3Q9Y6I4 520 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 NUMBLQ9Y6R0 609 aa20.84■□□□□ 0.93
COL9A3-204ENST00000463487 ZNF638Q14966 1978 aaKnown RBP20.83■□□□□ 0.93
COL9A3-204ENST00000463487 SART1O43290 800 aaKnown RBP20.83■□□□□ 0.93
COL9A3-204ENST00000463487 FBXO21O94952 628 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 ZBED1O96006 694 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 TPM1P09493 284 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 RALAP11233 206 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 HDCP19113 662 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 GPD2P43304 727 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 ADIGQ0VDE8 80 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 PTPN21Q16825 1174 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 HECTD3Q5T447 861 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 STXBP5Q5T5C0 1151 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 SNX30Q5VWJ9 437 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 DENND1BQ6P3S1 775 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 ARID3BQ8IVW6 561 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-204ENST00000463487 TMEM35BQ8NCS4 154 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 SLC46A2Q9BY10 475 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 CNGB3Q9NQW8 809 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 ST7Q9NRC1 585 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 OBP2AQ9NY56 170 aa20.83■□□□□ 0.93
COL9A3-204ENST00000463487 CHORDC1Q9UHD1 332 aaPredicted RBP20.83■□□□□ 0.93
COL9A3-204ENST00000463487 ITIH6Q6UXX5 1313 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 A0A1W2PQJ5 194 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 LSM8O95777 96 aaKnown RBP20.82■□□□□ 0.92
COL9A3-204ENST00000463487 PBX1P40424 430 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 RGS7P49802 495 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 TDGQ13569 410 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 TRIM14Q14142 442 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 PMF1Q6P1K2 205 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 PARM1Q6UWI2 310 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 TRIM72Q6ZMU5 477 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 PASD1Q8IV76 773 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 YAF2Q8IY57 180 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 SCML4Q8N228 414 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 CELF5Q8N6W0 485 aaKnown RBP20.82■□□□□ 0.92
COL9A3-204ENST00000463487 IPO4Q8TEX9 1081 aaKnown RBP20.82■□□□□ 0.92
COL9A3-204ENST00000463487 DEPDC1BQ8WUY9 529 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 ZSWIM3Q96MP5 696 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 TRIM62Q9BVG3 475 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 ULBP1Q9BZM6 244 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 MIS12Q9H081 205 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 SYNCQ9H7C4 482 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 TDP1Q9NUW8 608 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 NAGPAQ9UK23 515 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 DENND4CQ5VZ89 1909 aa20.82■□□□□ 0.92
COL9A3-204ENST00000463487 OBSL1O75147 1896 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 MYO16Q9Y6X6 1858 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 TULP2O00295 520 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 NRG2O14511 850 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-204ENST00000463487 ASGR2P07307 311 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 ALADP13716 330 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 LCP1P13796 627 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 ARID5AQ03989 594 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 PDCLQ13371 301 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 ZNF268Q14587 947 aaPredicted RBP20.81■□□□□ 0.92
COL9A3-204ENST00000463487 PM20D1Q6GTS8 502 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 SARM1Q6SZW1 724 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 DDX42Q86XP3 938 aaKnown RBP eCLIP20.81■□□□□ 0.92
COL9A3-204ENST00000463487 UBALD2Q8IYN6 164 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 IRGQQ8WZA9 623 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 FGF14Q92915 247 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 KXD1Q9BQD3 176 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 TRIM5Q9C035 493 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 THG1LQ9NWX6 298 aaKnown RBP20.81■□□□□ 0.92
COL9A3-204ENST00000463487 CLIC5Q9NZA1 410 aa20.81■□□□□ 0.92
COL9A3-204ENST00000463487 C5orf42Q9H799 3197 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 NUP210Q8TEM1 1887 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-204ENST00000463487 C2orf78A6NCI8 922 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 TNFRSF10AO00220 468 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 TLR5O60602 858 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 OAS1P00973 400 aaKnown RBP20.8■□□□□ 0.92
COL9A3-204ENST00000463487 ZDHHC11BP0C7U3 371 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 CDR2Q01850 454 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 ASIC2Q16515 512 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 SFMBT2Q5VUG0 894 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 TAF3Q5VWG9 929 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 SPECC1LQ69YQ0 1117 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 NOP9Q86U38 636 aaKnown RBP20.8■□□□□ 0.92
COL9A3-204ENST00000463487 ARL14EPQ8N8R7 260 aaPredicted RBP20.8■□□□□ 0.92
COL9A3-204ENST00000463487 BAP1Q92560 729 aa20.8■□□□□ 0.92
COL9A3-204ENST00000463487 COL25A1Q9BXS0 654 aaPredicted RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms