RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 NUDCD1Q96RS6 583 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 TRIM55Q9BYV6 548 aa17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 C12orf65Q9H3J6 166 aaKnown RBP17.11■□□□□ 0.33
CLCNKA-203ENST00000439316 STRNO43815 780 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 LUC7L3O95232 432 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 ARIH2O95376 493 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 TRUB2O95900 331 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 MT-ND3P03897 115 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 RBP3P10745 1247 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 ELK3P41970 407 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 SLC18A2Q05940 514 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 OVGP1Q12889 678 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 CBLBQ13191 982 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 ACAP1Q15027 740 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 TAF5Q15542 800 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 TAF11Q15544 211 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 ZNF792Q3KQV3 632 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 MPZL3Q6UWV2 235 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 SH2D5Q6ZV89 423 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 GPR142Q7Z601 462 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 DHX37Q8IY37 1157 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 SLC44A1Q8WWI5 657 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 MCRS1Q96EZ8 462 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 ANKRD36BP1Q96IX9 119 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 FAM167AQ96KS9 214 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 MIPEPQ99797 713 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 DENND2DQ9H6A0 471 aaPredicted RBP17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 PTPRHQ9HD43 1115 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 NXF1Q9UBU9 619 aaKnown RBP17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 PCSK1NQ9UHG2 260 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 CPA4Q9UI42 421 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 DCTN4Q9UJW0 460 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 LRRC42Q9Y546 428 aa17.1■□□□□ 0.33
CLCNKA-203ENST00000439316 TCRBV9S1A1TA0A576 114 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 LPXNO60711 386 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 DNAJC6O75061 913 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TGDSO95455 350 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 IL1BP01584 269 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SRGAP2CP0DJJ0 459 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 MARK3P27448 753 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TCF7P36402 384 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ROR1Q01973 937 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 PTK7Q13308 1070 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 MTM1Q13496 603 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 MXD4Q14582 209 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 KCNJ11Q14654 390 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 NOMO1Q15155 1222 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 CMPK2Q5EBM0 449 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TSHZ1Q6ZSZ6 1077 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 RNF149Q8NC42 400 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SPATA18Q8TC71 538 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 PTCD3Q96EY7 689 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SERAC1Q96JX3 654 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TSSK1BQ9BXA7 367 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SDCBP2Q9H190 292 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 C2orf40Q9H1Z8 148 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 RSAD1Q9HA92 442 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TEX264Q9Y6I9 313 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 MGAMO43451 1857 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ASB14A6NK59 587 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 KIF3CO14782 793 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 GAS2O43903 313 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SPAG6O75602 509 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ECM2O94769 699 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ENDOD1O94919 500 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 HAUS5O94927 633 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SLC10A3P09131 477 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 GABRB2P47870 512 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ZNF200P98182 395 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 BLMHQ13867 455 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 PRKD1Q15139 912 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 ARMCX2Q7L311 632 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SEPT1Q8WYJ6 367 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 HSPH1Q92598 858 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SKA1Q96BD8 255 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 NAF1Q96HR8 494 aaKnown RBP17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SYNCQ9H7C4 482 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 SIX4Q9UIU6 781 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 USP18Q9UMW8 372 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 TLL2Q9Y6L7 1015 aa17.09■□□□□ 0.33
CLCNKA-203ENST00000439316 IGKV6-21A0A0C4DH24 114 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 KBTBD13C9JR72 458 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 SMNDC1O75940 238 aaKnown RBP eCLIP17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 RNF8O76064 485 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 STIP1P31948 543 aaKnown RBP17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 PCK1P35558 622 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 NRLP54845 237 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 TAF1CQ15572 869 aaPredicted RBP17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 KBTBD12Q3ZCT8 623 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 ZNF667Q5HYK9 610 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 LRRC6Q86X45 466 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 SLC4A11Q8NBS3 891 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 CFAP61Q8NHU2 1237 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 TTC8Q8TAM2 541 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 FAXDC2Q96IV6 333 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 PEBP4Q96S96 227 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 TUBB6Q9BUF5 446 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 KCNK13Q9HB14 408 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 PNPLA8Q9NP80 782 aa17.08■□□□□ 0.33
CLCNKA-203ENST00000439316 PDGFCQ9NRA1 345 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms