RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 AFF4Q9UHB7 1163 aaKnown RBP17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 PCDHA11Q9Y5I1 949 aa17.97■□□□□ 0.47
CCDC28B-202ENST00000421922 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 KCNK3O14649 394 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 CAPN9O14815 690 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 ZBED1O96006 694 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 GLI1P08151 1106 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 USP17L7P0C7H9 530 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 TUFMP49411 452 aaKnown RBP17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 SLC5A3P53794 718 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 UBE3AQ05086 875 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 ZFYVE27Q5T4F4 411 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 CCDC181Q5TID7 509 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 GPRIN1Q7Z2K8 1008 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 CLEC4CQ8WTT0 213 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 RXFP2Q8WXD0 754 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 AUTS2Q8WXX7 1259 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 IRGQQ8WZA9 623 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 PIWIL1Q96J94 861 aaKnown RBP17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 PSMB7Q99436 277 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 CLSTN3Q9BQT9 956 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 TLR10Q9BXR5 811 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 EMILIN2Q9BXX0 1053 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 FBXO44Q9H4M3 255 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 TMEM30AQ9NV96 361 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 FNIP2Q9P278 1114 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 MSRAQ9UJ68 235 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 MTUS1Q9ULD2 1270 aa17.96■□□□□ 0.47
CCDC28B-202ENST00000421922 CCDC66A2RUB6 948 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 GRXCR1A8MXD5 290 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 HHLA1C9JL84 531 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 SOX1O00570 391 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 FANCGO15287 622 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 ADAM12O43184 909 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 DAB1O75553 588 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 RTN3O95197 1032 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 RB1P06400 928 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 CA3P07451 260 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 LINC00271P0C7V0 271 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 HAPLN1P10915 354 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 ZNF143P52747 638 aaPredicted RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 DAOAP59103 153 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 DUSP4Q13115 394 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 ACAP1Q15027 740 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 DDR2Q16832 855 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 HADHQ16836 314 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 NUP93Q8N1F7 819 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 NIPA2Q8N8Q9 360 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 HES6Q96HZ4 224 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 TGS1Q96RS0 853 aaKnown RBP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 OSBPL9Q96SU4 736 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 NCAPGQ9BPX3 1015 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 TCF25Q9BQ70 676 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 C17orf80Q9BSJ5 609 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 CNPY3Q9BT09 278 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 CDC23Q9UJX2 597 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 TMEM59LQ9UK28 342 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 STAP1Q9ULZ2 295 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 SLC27A5Q9Y2P5 690 aa17.95■□□□□ 0.46
CCDC28B-202ENST00000421922 CUL9Q8IWT3 2517 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 C2CD4BA6NLJ0 364 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 PRRG1O14668 218 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 GABBR2O75899 941 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CSPG5O95196 566 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CXCL14O95715 111 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 ADH1AP07327 375 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 MYOGP15173 224 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 PRLRP16471 622 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CTNNA2P26232 953 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 GJC1P36383 396 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 YWHAZP63104 245 aaKnown RBP17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CKAP4Q07065 602 aaKnown RBP17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 RAB33AQ14088 237 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 RAB30Q15771 203 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 TAF12Q16514 161 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 WHAMMP3Q1A5X7 153 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CC2D1AQ6P1N0 951 aaPredicted RBP17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 ARCQ7LC44 396 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 RHOT1Q8IXI2 618 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 ZNF461Q8TAF7 563 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 PBKQ96KB5 322 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CAPZA3Q96KX2 299 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 CYP4F11Q9HBI6 524 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 POPDC2Q9HBU9 364 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 ALG13Q9NP73 1137 aaKnown RBP17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 TLR9Q9NR96 1032 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 EHD2Q9NZN4 543 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 MRFAP1Q9Y605 127 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 A0A0C4DFX4 3053 aa17.94■□□□□ 0.46
CCDC28B-202ENST00000421922 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 DPYSL4O14531 572 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 PSTPIP1O43586 416 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 LTFP02788 710 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 CXCR5P32302 372 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 CTNNA1P35221 906 aaKnown RBP17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 FLT3P36888 993 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 PAFAH1B1P43034 410 aa17.93■□□□□ 0.46
CCDC28B-202ENST00000421922 ALDH1A3P47895 512 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms