RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 EPOPA6NHQ4 379 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 CAPN15O75808 1086 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 CXCL14O95715 111 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 ATP1A1P05023 1023 aaKnown RBP10.17□□□□□ -0.78
RIF1-202ENST00000414861 USP17L7P0C7H9 530 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 HAPLN1P10915 354 aaPredicted RBP10.17□□□□□ -0.78
RIF1-202ENST00000414861 BMP8BP34820 402 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 USP46P62068 366 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 SMARCB1Q12824 385 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 RAB33AQ14088 237 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 C11orf63Q6NUN7 778 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 DCUN1D2Q6PH85 259 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 SLC26A9Q7LBE3 791 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 GPR65Q8IYL9 337 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 TDHQ8IZJ6 230 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 C8orf48Q96LL4 319 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 UBXN6Q9BZV1 441 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 PNPLA8Q9NP80 782 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.17□□□□□ -0.78
RIF1-202ENST00000414861 FNIP2Q9P278 1114 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 STK39Q9UEW8 545 aa10.17□□□□□ -0.78
RIF1-202ENST00000414861 AFF4Q9UHB7 1163 aaKnown RBP10.17□□□□□ -0.78
RIF1-202ENST00000414861 C2orf71A6NGG8 1288 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 YJEFN3A6XGL0 299 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 E7ENQ6 273 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 TRIM66O15016 1216 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 ATF2P15336 505 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 PGFP49763 221 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 RGS19P49795 217 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 DAOAP59103 153 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 MRPS5P82675 430 aaKnown RBP10.16□□□□□ -0.78
RIF1-202ENST00000414861 MTMR3Q13615 1198 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 IFI16Q16666 785 aaKnown RBP10.16□□□□□ -0.78
RIF1-202ENST00000414861 PPP2R2DQ66LE6 453 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 NT5DC3Q86UY8 548 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 C2orf15Q8WU43 125 aaKnown RBP10.16□□□□□ -0.78
RIF1-202ENST00000414861 TLR10Q9BXR5 811 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 ADAM33Q9BZ11 813 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 USP3Q9Y6I4 520 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 C2CD4BA6NLJ0 364 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 KIF2AO00139 706 aaPredicted RBP10.16□□□□□ -0.78
RIF1-202ENST00000414861 MYO1FO00160 1098 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 FSCN2O14926 492 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 ZBED1O96006 694 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 RB1P06400 928 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 SPATA31D3P0C874 917 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 TCF4P15884 667 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 COMTP21964 271 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 DNA2P51530 1060 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 RAB6CQ53S08 254 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 TPGS2Q68CL5 300 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 CHRDL2Q6WN34 429 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 SPATA31D4Q6ZUB0 917 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 ZDHHC17Q8IUH5 632 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 GDPD5Q8WTR4 605 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 KLHL5Q96PQ7 755 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 NAPGQ99747 312 aaPredicted RBP10.16□□□□□ -0.78
RIF1-202ENST00000414861 RAB6CQ9H0N0 254 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 PRO3102Q9H379 93 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 CYP4F11Q9HBI6 524 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 CNGB3Q9NQW8 809 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 IRAK3Q9Y616 596 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 ALG6Q9Y672 507 aa10.16□□□□□ -0.78
RIF1-202ENST00000414861 TGM5O43548 720 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 PROSCO94903 275 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 TFE3P19532 575 aaPredicted RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 MARCKSL1P49006 195 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 SNX16P57768 344 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 CREMQ03060 361 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 UBE3AQ05086 875 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 GPM6BQ13491 265 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 SMC1AQ14683 1233 aaKnown RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 RAB30Q15771 203 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 DNTTIP2Q5QJE6 756 aaKnown RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 SH3PXD2AQ5TCZ1 1133 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 MEI1Q5TIA1 1274 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 MRPL43Q8N983 215 aaKnown RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 GIPC2Q8TF65 315 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 RXFP2Q8WXD0 754 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 FAM149B1Q96BN6 582 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 CFAP57Q96MR6 1250 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 PSMB7Q99436 277 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 MSRAQ9UJ68 235 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 YIPF1Q9Y548 306 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 CTAGE9A4FU28 777 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 H3BNC9 293 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 FBXO21O94952 628 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 FYNP06241 537 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 PSMA2P25787 234 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 CASQ1P31415 396 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 SCNN1AP37088 669 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 PITX1P78337 314 aaPredicted RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 C15orf59Q2T9L4 293 aaPredicted RBP10.15□□□□□ -0.78
RIF1-202ENST00000414861 PM20D1Q6GTS8 502 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 PEX26Q7Z412 305 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 NUP93Q8N1F7 819 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 ARFGAP1Q8N6T3 406 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 FNIP1Q8TF40 1166 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 ARNTL2Q8WYA1 636 aa10.15□□□□□ -0.78
RIF1-202ENST00000414861 KRT35Q92764 455 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms