RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 GOLGA4Q13439 2230 aaKnown RBP9.12□□□□□ -0.95
HMGB1P39-201ENST00000366304 USP9XQ93008 2570 aaPredicted RBP9.12□□□□□ -0.95
HMGB1P39-201ENST00000366304 CEP192Q8TEP8 1941 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 COL5A1P20908 1838 aaPredicted RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 MYMKA6NI61 221 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 TISP43B9A030 160 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 APODP05090 189 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 OR52Z1P0C646 297 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 KRT10P13645 584 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 XBP1P17861 261 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 CDC25AP30304 524 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 TNFRSF4P43489 277 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 GUCA2AQ02747 115 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 CFHR1Q03591 330 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 RESTQ13127 1097 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 BYSLQ13895 437 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 PDIA5Q14554 519 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 IL17AQ16552 155 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 HLA-BQ31612 363 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 LY6G5CQ5SRR4 150 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 EGFLAMQ63HQ2 1017 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 BRICD5Q6PL45 260 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 DHRS13Q6UX07 377 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 RABEPKQ7Z6M1 372 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 PARP9Q8IXQ6 854 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 DCP1BQ8IZD4 617 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 RGL4Q8IZJ4 473 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 PDCL2Q8N4E4 241 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 ZCCHC9Q8N567 271 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 NAT16Q8N8M0 369 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 NECAB1Q8N987 351 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 LSM14AQ8ND56 463 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 C1orf216Q8TAB5 229 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 SPIRE2Q8WWL2 714 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 MMTAG2Q9BU76 263 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 CCSER1Q9C0I3 900 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 IKZF4Q9H2S9 585 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 GAREM1Q9H706 876 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 TM7SF3Q9NS93 570 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 SMPD4Q9NXE4 827 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 DNMT3LQ9UJW3 386 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 CPSF3Q9UKF6 684 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 GTF3C4Q9UKN8 822 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 L1RE1Q9UN81 338 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 RAD54BQ9Y620 910 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 CYP46A1Q9Y6A2 500 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 ZNF638Q14966 1978 aaKnown RBP9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 ANAPC1Q9H1A4 1944 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 FLNCQ14315 2725 aa9.11□□□□□ -0.95
HMGB1P39-201ENST00000366304 A0A0B4J269 797 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 OGTO15294 1046 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 JAK2O60674 1132 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 ATP2C2O75185 946 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 TULP3O75386 442 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 CDKL5O76039 1030 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 ADH5P11766 374 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 PLS3P13797 630 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 HOXB2P14652 356 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 MUTP22033 750 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 EIF2DP41214 584 aaKnown RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 MATR3P43243 847 aaKnown RBP eCLIP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 SLC7A9P82251 487 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 SMARCB1Q12824 385 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 STRN3Q13033 797 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 KCNB1Q14721 858 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 TMEM132DQ14C87 1099 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 CCDC157Q569K6 752 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 METTL23Q86XA0 190 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 THEM5Q8N1Q8 247 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 ZNF513Q8N8E2 541 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 ERMNQ8TAM6 284 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 RHBDD1Q8TEB9 315 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 IPO4Q8TEX9 1081 aaKnown RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 LEO1Q8WVC0 666 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 DNASE2BQ8WZ79 361 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 P2RY11Q96G91 374 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 MRGPRX1Q96LB2 322 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 DRC1Q96MC2 740 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 FAM124BQ9H5Z6 455 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 RPF1Q9H9Y2 349 aaKnown RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 PRDM9Q9NQV7 894 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 PDRG1Q9NUG6 133 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 GMIPQ9P107 970 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 CFAP97Q9P2B7 532 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 UXTQ9UBK9 157 aaPredicted RBP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 DSEQ9UL01 958 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 CPQQ9Y646 472 aa9.1□□□□□ -0.95
HMGB1P39-201ENST00000366304 TBC1D3BA6NDS4 549 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 ZNF840PA6NDX5 716 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 KPNA7A9QM74 516 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 KCNJ18B7U540 433 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 WASH3PC4AMC7 463 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 ANKRD63C9JTQ0 380 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 KCNK3O14649 394 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 OLFM2O95897 454 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 ZNF883P0CG24 379 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 GUCY2CP25092 1073 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 ACOT2P49753 483 aa9.09□□□□□ -0.95
HMGB1P39-201ENST00000366304 TAF6P49848 677 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms