RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 COG5Q9UP83 839 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 HCFC2Q9Y5Z7 792 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 C2orf71A6NGG8 1288 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 LINC01565O15544 149 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 PALMO75781 387 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 CTSAP10619 480 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 HNRNPH3P31942 346 aaKnown RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 DSG1Q02413 1049 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 ASTE1Q2TB18 679 aaPredicted RBP9.68□□□□□ -0.86
USP4-202ENST00000351842 ZNF461Q8TAF7 563 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 WDR24Q96S15 920 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 HINFPQ9BQA5 517 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 ZBP1Q9H171 429 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 CHST7Q9NS84 486 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 GPATCH2LQ9NWQ4 482 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 GMIPQ9P107 970 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 MTRRQ9UBK8 725 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 NAALADL1Q9UQQ1 740 aa9.68□□□□□ -0.86
USP4-202ENST00000351842 KIF5CO60282 957 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SRGAP2O75044 1071 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 GABBR2O75899 941 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MAP3K6O95382 1288 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 STAU1O95793 577 aaKnown RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 TCF4P15884 667 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 PDGFRAP16234 1089 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 PSMA2P25787 234 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 GPC5P78333 572 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 CYP4F8P98187 520 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ENPEPQ07075 957 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 RAB30Q15771 203 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ODF2Q5BJF6 829 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 STXBP5Q5T5C0 1151 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 HS6ST3Q8IZP7 471 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SLC35F6Q8N357 371 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MRPL43Q8N983 215 aaKnown RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 HNRNPABQ99729 332 aaKnown RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 EMILIN2Q9BXX0 1053 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MAGEB5Q9BZ81 275 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ZCWPW1Q9H0M4 648 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SMARCAL1Q9NZC9 954 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MYO6Q9UM54 1294 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ATG2BQ96BY7 2078 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 PI4K2BG5E9Z4 385 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 TMEM189-UBE2V1I3L0A0 370 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MYO1FO00160 1098 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 INPPL1O15357 1258 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 CYP11A1P05108 521 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 UNGP13051 313 aaPredicted RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 CAPN2P17655 700 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ATF6P18850 670 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 EFEMP1Q12805 493 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 GPR17Q13304 367 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 ZNF211Q13398 564 aaPredicted RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 RASIP1Q5U651 963 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SYPL2Q5VXT5 272 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 FAM131BQ86XD5 332 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SIK2Q9H0K1 926 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 CLDND1Q9NY35 253 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 YIPF1Q9Y548 306 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 PDCD11Q14690 1871 aaKnown RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 RALGAPA2Q2PPJ7 1873 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 GBF1Q92538 1859 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 LTBP2Q14767 1821 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 A0A1W2PRU2 124 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 OR6C75A6NL08 312 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 BUB1BO60566 1050 aaPredicted RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 VNN2O95498 520 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MMP8P22894 467 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 MAPRE1Q15691 268 aaKnown RBP9.67□□□□□ -0.86
USP4-202ENST00000351842 ATP13A4Q4VNC1 1196 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 PPM1LQ5SGD2 360 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 SLC35F5Q8WV83 523 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 KLHL5Q96PQ7 755 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 TSPAN18Q96SJ8 248 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 FAM118BQ9BPY3 351 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 CUL9Q8IWT3 2517 aa9.67□□□□□ -0.86
USP4-202ENST00000351842 A0A1W2PQH9 124 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ANKRD62A6NC57 917 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ZBED1O96006 694 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ATF2P15336 505 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MRPS25P82663 173 aaKnown RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 MAPK8IP2Q13387 824 aaPredicted RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 TCEAL5Q5H9L2 206 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 PPP6R3Q5H9R7 873 aaPredicted RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 C10orf120Q5SQS8 335 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 RARS2Q5T160 578 aaKnown RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 GRASPQ7Z6J2 395 aaPredicted RBP9.66□□□□□ -0.86
USP4-202ENST00000351842 CCDC50Q8IVM0 306 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 DEFB106AQ8N104 65 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 TTC39CQ8N584 583 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MSANTD4Q8NCY6 345 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 OLIG1Q8TAK6 271 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ANKRD7Q92527 254 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 HSPH1Q92598 858 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 ATXN3LQ9H3M9 355 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 EHD2Q9NZN4 543 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 GABRR2P28476 465 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MARCKSL1P49006 195 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 CENPCQ03188 943 aa9.66□□□□□ -0.86
USP4-202ENST00000351842 MAMLD1Q13495 774 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms