RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ARF4P18085 180 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 VHLP40337 213 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 ARHGAP22Q7Z5H3 698 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 MTDHQ86UE4 582 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 VCXQ9H320 206 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 FZD8Q9H461 694 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 LMCD1Q9NZU5 365 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CXCL11O14625 94 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 TJP3O95049 919 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 YBX3P16989 372 aaKnown RBP eCLIP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 PTPN4P29074 926 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CCDC6Q16204 474 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 MAP1SQ66K74 1059 aaPredicted RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 PPP1R21Q6ZMI0 780 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 KBTBD2Q8IY47 623 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 DENND1AQ8TEH3 1009 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 VPS37BQ9H9H4 285 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 SCOCQ9UIL1 159 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 LRCH1Q9Y2L9 728 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 MAGEB2O15479 319 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 LIASO43766 372 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CST8O60676 142 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 TBX10O75333 385 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 C22orf31O95567 290 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 ERBB2P04626 1255 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 EPHX2P34913 555 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CUL3Q13618 768 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 KPNB1Q14974 876 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CTC1Q2NKJ3 1217 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 PLPPR4Q7Z2D5 763 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 RBM41Q96IZ5 413 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 PIWIL1Q96J94 861 aaKnown RBP16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 VCPIP1Q96JH7 1222 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 ELOVL4Q9GZR5 314 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 FAM49BQ9NUQ9 324 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 CNTN6Q9UQ52 1028 aa16.24■□□□□ 0.19
SHROOM1-201ENST00000319854 PAPPA2Q9BXP8 1791 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 EDF1O60869 148 aaKnown RBP16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 CDH16O75309 829 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 TCEA3O75764 348 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 GCAP28676 217 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 SLC1A5Q15758 541 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 FAM102AQ5T9C2 384 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 SCYL2Q6P3W7 929 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 RCOR2Q8IZ40 523 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 C4orf33Q8N1A6 199 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 PTPRHQ9HD43 1115 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 NEU2Q9Y3R4 380 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 IGKV6-21A0A0C4DH24 114 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 TRAFD1O14545 582 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 RPA3P35244 121 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 PHKA2P46019 1235 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 GDF10P55107 478 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 MMRN1Q13201 1228 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 DPP9Q86TI2 863 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 CCDC125Q86Z20 511 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 ZBED8Q8IZ13 594 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 GATA6Q92908 595 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 LENG1Q96BZ8 264 aaPredicted RBP16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 HPDLQ96IR7 371 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 TLE6Q9H808 572 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 UBN1Q9NPG3 1134 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 STOML1Q9UBI4 398 aa16.23■□□□□ 0.19
SHROOM1-201ENST00000319854 DNAJC25-GNG10A0A024R161 153 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 CAPN9O14815 690 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 HCRTO43612 131 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 SERPINB4P48594 390 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 ARHGAP1Q07960 439 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 PRAMEF19Q5SWL8 479 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 SESTD1Q86VW0 696 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 ARFGAP1Q8N6T3 406 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 UBR7Q8N806 425 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 KCTD6Q8NC69 237 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 ACTL9Q8TC94 416 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 WDR60Q8WVS4 1066 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 PRR11Q96HE9 360 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 SETD4Q9NVD3 440 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 KANSL3Q9P2N6 904 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 LRCH4O75427 683 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 DCTN3O75935 186 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 UBTFL6P0CB48 400 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 MAGEA4P43358 317 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 ERFP50548 548 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 OTUD4Q01804 1114 aaKnown RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 C15orf59Q2T9L4 293 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 SLC10A6Q3KNW5 377 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 TFDP3Q5H9I0 405 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 OTOAQ7RTW8 1153 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 APLFQ8IW19 511 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 ZFP69BQ9UJL9 534 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 MICAL2O94851 1124 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 AP3M2P53677 418 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 PTPN11Q06124 597 aaPredicted RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 PPIL2Q13356 520 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 PKN2Q16513 984 aaKnown RBP16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 OR6B2Q6IFH4 312 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 DPY19L2Q6NUT2 758 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 RFX8Q6ZV50 586 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 NLRP9Q7RTR0 991 aa16.22■□□□□ 0.19
SHROOM1-201ENST00000319854 RFX6Q8HWS3 928 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms