RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FBXO42Q6P3S6 717 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 LRRC74BQ6ZQY2 392 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM110Q86TL2 294 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 MAPKAPK5Q8IW41 473 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ENDOVQ8N8Q3 282 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF557Q8N988 423 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 FAM133AQ8N9E0 248 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SPIRE2Q8WWL2 714 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CEP170P1Q96L14 293 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RNF145Q96MT1 663 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 NYAP2Q9P242 653 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TTC3P53804 2025 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 HNRNPDLO14979 420 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DNAJC6O75061 913 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SEMA3DO95025 777 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ECDO95905 644 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SLC2A3P11169 496 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PPIBP23284 216 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 HIRAP54198 1017 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DENND6AQ8IWF6 608 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 FAM172AQ8WUF8 416 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CLCC1Q96S66 551 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CYLDQ9NQC7 956 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CNGB3Q9NQW8 809 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PCDHB8Q9UN66 801 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KIAA1024Q9UPX6 916 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CDYLQ9Y232 598 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 FAM32AQ9Y421 112 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PIGBOS1A0A0B4J2F0 54 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PNPLA4P41247 253 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PRCPP42785 496 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KLHDC7AQ5VTJ3 777 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DNAAF5Q86Y56 855 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 BBS7Q8IWZ6 715 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DRAXINQ8NBI3 349 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RAPGEF5Q92565 580 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 NCKIPSDQ9NZQ3 722 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DLGAP2Q9P1A6 1054 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 FNIP2Q9P278 1114 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SPATA31A6Q5VVP1 1343 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 IGSF9BQ9UPX0 1349 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ARID1BQ8NFD5 2236 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 KIDINS220Q9ULH0 1771 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 POLBP06746 335 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 P4HBP07237 508 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CSF1RP07333 972 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF24P17028 368 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 MSH3P20585 1137 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 UBA1P22314 1058 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SDC4P31431 198 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PPIDQ08752 370 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 IL18R1Q13478 541 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 Q4G0T1 1027 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 C10orf62Q5T681 223 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 DHDDSQ86SQ9 333 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 GLYCTKQ8IVS8 523 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ULK4Q96C45 1275 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RUBCNLQ9H714 662 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TMX2Q9Y320 296 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 TMEM131LA2VDJ0 1609 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CCDC154A6NI56 674 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ZNF487B1APH4 448 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 SERPINA6P08185 405 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 OSBPP22059 807 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 ARHGDIBP52566 201 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CACNA2D1P54289 1103 aa5.42□□□□□ -1.54
SCN1A-201ENST00000303395 CTTNQ14247 550 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RP9Q8TA86 221 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 RBM12Q9NTZ6 932 aaKnown RBP5.42□□□□□ -1.54
SCN1A-201ENST00000303395 PXDNQ92626 1479 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 E5RI56 91 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 TRIM24O15164 1050 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 FBXO21O94952 628 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 ETFBP38117 255 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 IFNAR2P48551 515 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 SLC26A2P50443 739 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 TRIP10Q15642 601 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 SPOPLQ6IQ16 392 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 PKN3Q6P5Z2 889 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 UNC5BQ8IZJ1 945 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 PPM1KQ8N3J5 372 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 ZSCAN18Q8TBC5 510 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-201ENST00000303395 THRSPQ92748 146 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 TLCD1Q96CP7 247 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 NEDD4LQ96PU5 975 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 DDX50Q9BQ39 737 aaKnown RBP5.41□□□□□ -1.54
SCN1A-201ENST00000303395 ST6GALNAC4Q9H4F1 302 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 NIP7Q9Y221 180 aaKnown RBP eCLIP5.41□□□□□ -1.54
SCN1A-201ENST00000303395 GRXCR2A6NFK2 248 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 PRMT5O14744 637 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-201ENST00000303395 ASNA1O43681 348 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 TIPRLO75663 272 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 MAGEA4P43358 317 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 MAPKAPK2P49137 400 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 PACS2Q86VP3 889 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 UNC45BQ8IWX7 931 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 URGCPQ8TCY9 931 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 HES6Q96HZ4 224 aa5.41□□□□□ -1.54
SCN1A-201ENST00000303395 PIH1D3Q9NQM4 214 aaKnown RBP5.41□□□□□ -1.54
SCN1A-201ENST00000303395 MAP2P11137 1827 aaKnown RBP5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms