RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 K7EQS6 105 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 ACTN4O43707 911 aaKnown RBP13.54□□□□□ -0.24
CD44-203ENST00000278386 KLRC4O43908 158 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 AP1G2O75843 785 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 APODP05090 189 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 SLFN14P0C7P3 912 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 IRF1P10914 325 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 CCDC130P13994 396 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 TRIM21P19474 475 aaKnown RBP13.54□□□□□ -0.24
CD44-203ENST00000278386 PIK3CAP42336 1068 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 STK4Q13043 487 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 ORC1Q13415 861 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 GAB4Q2WGN9 574 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 KMT5BQ4FZB7 885 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 CEP135Q66GS9 1140 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 TCEAL6Q6IPX3 200 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 ACOT1Q86TX2 421 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 PARD3BQ8TEW8 1205 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 OVCA2Q8WZ82 227 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 TCEAL3Q969E4 200 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 KCNK16Q96T55 309 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 VRTNQ9H8Y1 702 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 VPS45Q9NRW7 570 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 RXFP3Q9NSD7 469 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 EBF1Q9UH73 591 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 CIZ1Q9ULV3 898 aaPredicted RBP13.54□□□□□ -0.24
CD44-203ENST00000278386 MMP17Q9ULZ9 603 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 INVSQ9Y283 1065 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 SH3BP1Q9Y3L3 701 aa13.54□□□□□ -0.24
CD44-203ENST00000278386 A0A1B0GVL5 298 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.53□□□□□ -0.24
CD44-203ENST00000278386 COCHO43405 550 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 ALDH1A2O94788 518 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 VNN1O95497 513 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 NR3C1P04150 777 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 PFKFB1P16118 471 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 TIE1P35590 1138 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 SLC6A11P48066 632 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 LIMK1P53667 647 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 DLG4P78352 724 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 USP39Q53GS9 565 aaKnown RBP13.53□□□□□ -0.24
CD44-203ENST00000278386 PLA2G2CQ5R387 149 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 HECTD3Q5T447 861 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 STPG1Q5TH74 334 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 RNF43Q68DV7 783 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 C11orf74Q86VG3 221 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 C12orf40Q86WS4 652 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 ALLCQ8N6M5 410 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 KIAA1958Q8N8K9 716 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 SCAMP5Q8TAC9 235 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 JAKMIP2Q96AA8 810 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 PAGE5Q96GU1 130 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 PNKPQ96T60 521 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 EDEM2Q9BV94 578 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 SDCBP2Q9H190 292 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 CCSER2Q9H7U1 834 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.53□□□□□ -0.245e-38■■■■■ 698.7
CD44-203ENST00000278386 ARHGEF4Q9NR80 690 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 FAM49BQ9NUQ9 324 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 GMIPQ9P107 970 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 BCCIPQ9P287 314 aaKnown RBP eCLIP13.53□□□□□ -0.24
CD44-203ENST00000278386 TBC1D14Q9P2M4 693 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 HMGXB4Q9UGU5 601 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 FRMD4BQ9Y2L6 1034 aa13.53□□□□□ -0.24
CD44-203ENST00000278386 CNOT1A5YKK6 2376 aaKnown RBP13.52□□□□□ -0.24
CD44-203ENST00000278386 ANTXRLA6NF34 631 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 CALUO43852 315 aaPredicted RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 KAT7O95251 611 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 KLF8O95600 359 aaPredicted RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 CAVIN2O95810 425 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 C4BPAP04003 597 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 ADORA2BP29275 332 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 EIF2DP41214 584 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 MRPS21P82921 87 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 LY6G5CQ5SRR4 150 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 BTBD8Q5XKL5 378 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 PMS2CLQ68D20 193 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 CYP2U1Q7Z449 544 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 SLC9A9Q8IVB4 645 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 SFTPA1Q8IWL2 248 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 ADGRG2Q8IZP9 1017 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 FUKQ8N0W3 1084 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 TXNDC5Q8NBS9 432 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 MDGA1Q8NFP4 955 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 SLC2A14Q8TDB8 520 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 CCDC47Q96A33 483 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 SPACA7Q96KW9 195 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 CNOT6LQ96LI5 555 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 SPATA32Q96LK8 384 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 IMPG2Q9BZV3 1241 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 KCTD10Q9H3F6 313 aa13.52□□□□□ -0.25
CD44-203ENST00000278386 CHORDC1Q9UHD1 332 aaPredicted RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 TPRP12270 2363 aaKnown RBP13.52□□□□□ -0.25
CD44-203ENST00000278386 CACNA1BQ00975 2339 aa13.51□□□□□ -0.25
CD44-203ENST00000278386 E2F8A0AVK6 867 aa13.51□□□□□ -0.25
CD44-203ENST00000278386 PDXKO00764 312 aa13.51□□□□□ -0.25
CD44-203ENST00000278386 KIF20AO95235 890 aa13.51□□□□□ -0.25
CD44-203ENST00000278386 DHPSP49366 369 aaPredicted RBP13.51□□□□□ -0.25
CD44-203ENST00000278386 NDST1P52848 882 aa13.51□□□□□ -0.25
CD44-203ENST00000278386 MAP3K7CLP57077 242 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms