RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 UBE2QL1A1L167 161 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DLGAP3O95886 979 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 MAPTP10636 758 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 HNRNPH1P31943 449 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ARL4DP49703 201 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DLG4P78352 724 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ELAVL2Q12926 359 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SCUBE1Q8IWY4 988 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ELMO2Q96JJ3 720 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZBED2Q9BTP6 218 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 NDFIP2Q9NV92 336 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ARHGEF17Q96PE2 2063 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PDE5AO76074 875 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FTCDO95954 541 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CNPP09543 421 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PTX3P26022 381 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF746Q6NUN9 644 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ARMC6Q6NXE6 501 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TMC5Q6UXY8 1006 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 S100A13Q99584 98 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZFYVE1Q9HBF4 777 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GPAMQ9HCL2 828 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ABCC3O15438 1527 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 HEATR9A2RTY3 570 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CYP21A2P08686 494 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 NQO1P15559 274 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TCF4P15884 667 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CAPGP40121 348 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FMO5P49326 533 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 MAPK7Q13164 816 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TMEM132DQ14C87 1099 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TRIP10Q15642 601 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TRIP13Q15645 432 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 C3orf62Q6ZUJ4 267 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FAM47EQ6ZV65 393 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ADAT2Q7Z6V5 191 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 AFG1LQ8WV93 481 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 AGPAT1Q99943 283 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 KIFC1Q9BW19 673 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PDGFCQ9NRA1 345 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 TLR7Q9NYK1 1049 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ING4Q9UNL4 249 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SLX4Q8IY92 1834 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DNAJC13O75165 2243 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 LOC102724428A0A0B4J2F2 783 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SGTAO43765 313 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SLC25A27O95847 323 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CYP2C18P33260 490 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CPT1AP50416 773 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SIK1P57059 783 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CASP12Q6UXS9 341 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CDH24Q86UP0 819 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GPKOWQ92917 476 aaPredicted RBP eCLIP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ANTXR1Q9H6X2 564 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 THAP1Q9NVV9 213 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GALNT8Q9NY28 637 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GTF3C4Q9UKN8 822 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FAM58BPP0C7Q3 252 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 NPTX2P47972 431 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 COX10Q12887 443 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GALNT3Q14435 633 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FOXR2Q6PJQ5 311 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FAM43BQ6ZT52 329 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 YAF2Q8IY57 180 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DCP1BQ8IZD4 617 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CDC26Q8NHZ8 85 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FAM172AQ8WUF8 416 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 E2F7Q96AV8 911 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 LXNQ9BS40 222 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SPRTNQ9H040 489 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CIDEBQ9UHD4 219 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PSME2Q9UL46 239 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 IFT172Q9UG01 1749 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PHF20L1A8MW92 1017 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF862O60290 1169 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 REM1O75628 298 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CXCR2P25025 360 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 YWHABP31946 246 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 SERPINB5P36952 375 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 NSUN2Q08J23 767 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PRKAA1Q13131 559 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FRG1Q14331 258 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 RNFT2Q96EX2 444 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 RIT2Q99578 217 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 LRRC40Q9H9A6 602 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 FRMPD2Q68DX3 1309 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 DUOX1Q9NRD9 1551 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CPDO75976 1380 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GRAPQ13588 217 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 E2F4Q16254 413 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 LRRC24Q50LG9 513 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 KBTBD8Q8NFY9 601 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 GRAPLQ8TC17 118 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PNPT1Q8TCS8 783 aaKnown RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 RFT1Q96AA3 541 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF496Q96IT1 587 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ZNF184Q99676 751 aaPredicted RBP6.27□□□□□ -1.41
VPS13D-201ENST00000011700 PAGR1Q9BTK6 254 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 ADI1Q9BV57 179 aa6.27□□□□□ -1.41
VPS13D-201ENST00000011700 CYP39A1Q9NYL5 469 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms