RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Sf3b1Q99NB9 1304 aaKnown RBP12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Tulp4Q9JIL5 1547 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Unc13dB2RUP2 1085 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 March10E9PX79 788 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Aqp1Q02013 269 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Arid5aQ3U108 590 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ubap1Q8BH48 502 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 SntnQ8C9X1 147 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Chchd3Q9CRB9 227 aaKnown RBP12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 TcimQ9D915 106 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Oip5A2AQ14 241 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Mcm9Q2KHI9 1134 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gpatch4Q3TFK5 415 aaKnown RBP12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ttc16Q8C1F5 767 aa12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Leng8Q8CBY3 785 aaKnown RBP12.32□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gm12794L7MTS5 483 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Sptlc1O35704 473 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 InvsO89019 1062 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 RxrgP28705 463 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 PkmP52480 531 aaKnown RBP12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Garnl3Q3V0G7 1038 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ppp2r1bQ7TNP2 601 aaKnown RBP12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Catsper4Q8BVN3 442 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Abcb9Q9JJ59 762 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Cog8Q9JJA2 640 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Cyp4a12bA2A974 508 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 FanceB8JJD6 213 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ets2P15037 468 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Pth1rP41593 591 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 InaP46660 501 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rad54lP70270 747 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Cyp4a12aQ91WL5 508 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Pcdha5Q91Y15 934 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 1700017N19RikA0A087WPJ1 469 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Grk4O70291 574 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Scd1P13516 355 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ncam1P13595 1115 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Capn13Q3UW68 665 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ssxb10Q6XAR7 170 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Nsun6Q7TS68 476 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Serbp1Q9CY58 407 aaKnown RBP12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Kcnq5Q9JK45 933 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Irx5Q9JKQ4 484 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Tagln3Q9R1Q8 199 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Bmp15Q9Z0L4 392 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Mzf1S4R1L6 814 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Nme9A0A1L1SUL6 329 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 MtrA6H5Y3 1253 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 RarbP22605 482 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Krt6aP50446 553 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 MyrfQ3UR85 1138 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gm5431Q5NCB3 844 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gper1Q8BMP4 375 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Efl1Q8C0D5 1127 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Map3k21Q8VDG6 1002 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rnaseh2aQ9CWY8 301 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Nudt14Q9D142 222 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Batf3Q9D275 118 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 PrameQ9D4Z5 464 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Osbpl7A2A716 963 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 YwhaqP68254 245 aaKnown RBP12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Nt5c2Q3V1L4 560 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 RadilQ69Z89 1099 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Zbtb33Q8BN78 671 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Eef1akmt2Q9D853 244 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 DiabloQ9JIQ3 237 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Map3k6Q9WTR2 1291 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 ItgalP24063 1163 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Smarca1Q6PGB8 1046 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Sun2Q8BJS4 731 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 D830030K20RikE9PYQ5 218 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gm3043K7N693 218 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rad51Q08297 339 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Psd3Q2PFD7 1037 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Cand2Q6ZQ73 1235 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ubash3bQ8BGG7 638 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Mief1Q8BGV8 463 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Tmem154Q8C4Q9 181 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 GzmnQ920S1 248 aa12.31□□□□□ -0.44
Trim56-201ENSMUST00000054384 Trim67Q505D9 768 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Gtf3c4Q8BMQ2 817 aaKnown RBP12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 EngaseQ8BX80 734 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Smap1Q91VZ6 440 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Polr3hQ9D2C6 204 aaKnown RBP12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Tsc22d3Q9Z2S7 137 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Scgb2b18A0A087WPA9 112 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 AspgA0JNU3 564 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Mroh4G3X8W1 983 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Axin1O35625 863 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 AgtP11859 477 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Smyd5Q3TYX3 416 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Dapk2Q8VDF3 370 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Pcdha3Q91Y16 942 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rmnd5bQ91YQ7 393 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rxfp2Q91ZZ5 737 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Efhd2Q9D8Y0 240 aaKnown RBP12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Rnf25Q9QZR0 456 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Naaladl2A0A0N4SUJ3 795 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 EloblA6PWE0 161 aa12.3□□□□□ -0.44
Trim56-201ENSMUST00000054384 Ccdc8D3YZV8 685 aa12.3□□□□□ -0.44
Retrieved 100 of 22,080 RNA–protein pairs in 46.1 ms