RNA–Protein interactions for RNA: YPL065W

VPS28, Transcript of Component of the ESCRT-I complex, yeastyeast

Gene VPS28, Length 729 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS28YPL065W COX7P10174 60 aa0□□□□□ -2.41
VPS28YPL065W TY1B-BRQ12193 1756 aa-0.01□□□□□ -2.41
VPS28YPL065W DNF3Q12674 1656 aa-0.02□□□□□ -2.41
VPS28YPL065W YBR201C-AQ2V2Q3 67 aa-0.03□□□□□ -2.41
VPS28YPL065W YIL134C-AQ45U18 67 aa-0.03□□□□□ -2.41
VPS28YPL065W RPA190P10964 1664 aaKnown RBP-0.04□□□□□ -2.42
VPS28YPL065W PDX3P38075 228 aaKnown RBP-0.04□□□□□ -2.42
VPS28YPL065W SNU13P39990 126 aaKnown RBP-0.04□□□□□ -2.42
VPS28YPL065W MSL1P40567 111 aaPredicted RBP-0.04□□□□□ -2.42
VPS28YPL065W SGF11Q03067 99 aa-0.04□□□□□ -2.42
VPS28YPL065W BSC4P53841 131 aa-0.08□□□□□ -2.42
VPS28YPL065W YDR042CQ03205 200 aa-0.1□□□□□ -2.43
VPS28YPL065W POL1P13382 1468 aa-0.11□□□□□ -2.43
VPS28YPL065W YMR122W-AQ3E842 84 aa-0.13□□□□□ -2.43
VPS28YPL065W TOM6P33448 61 aa-0.14□□□□□ -2.43
VPS28YPL065W YDR029WQ12111 104 aa-0.14□□□□□ -2.43
VPS28YPL065W SUS1Q6WNK7 96 aa-0.14□□□□□ -2.43
VPS28YPL065W TY1B-LR3P0C2I6 1755 aaKnown RBP-0.14□□□□□ -2.43
VPS28YPL065W TY1B-PR3P0C2J1 1755 aaKnown RBP-0.14□□□□□ -2.43
VPS28YPL065W NHP2P32495 156 aaPredicted RBP-0.15□□□□□ -2.43
VPS28YPL065W TY1B-PR2P0C2J0 1756 aa-0.17□□□□□ -2.44
VPS28YPL065W YBR056W-AI2HB52 66 aa-0.17□□□□□ -2.44
VPS28YPL065W ZEO1Q08245 113 aa-0.17□□□□□ -2.44
VPS28YPL065W YAL065CO13511 128 aa-0.18□□□□□ -2.44
VPS28YPL065W MHF2Q3E829 80 aa-0.18□□□□□ -2.44
VPS28YPL065W SEN1Q00416 2231 aaKnown RBP-0.19□□□□□ -2.44
VPS28YPL065W HKR1P41809 1802 aa-0.2□□□□□ -2.44
VPS28YPL065W YHR214C-DP0CX93 97 aa-0.2□□□□□ -2.44
VPS28YPL065W GDB1Q06625 1536 aa-0.2□□□□□ -2.44
VPS28YPL065W TY1B-DR6P0C2I3 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-LR2P0C2I5 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-JR2P47100 1755 aaKnown RBP-0.22□□□□□ -2.44
VPS28YPL065W TY1B-MR1Q04214 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-MR2Q04670 1755 aaKnown RBP-0.22□□□□□ -2.44
VPS28YPL065W TY1B-NL1Q12112 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-GR1Q12141 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-GR3Q12316 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W TY1B-PLQ12414 1755 aaKnown RBP-0.22□□□□□ -2.44
VPS28YPL065W TY1B-ORQ92393 1755 aa-0.22□□□□□ -2.44
VPS28YPL065W ATP18P81450 59 aa-0.23□□□□□ -2.45
VPS28YPL065W SDH6Q3E785 79 aa-0.23□□□□□ -2.45
VPS28YPL065W PDR10P51533 1564 aa-0.24□□□□□ -2.45
VPS28YPL065W BPH1P25356 2167 aa-0.26□□□□□ -2.45
VPS28YPL065W SCP1Q08873 200 aa-0.26□□□□□ -2.45
VPS28YPL065W YPL225WQ08971 146 aaKnown RBP-0.26□□□□□ -2.45
VPS28YPL065W FPR2P32472 135 aa-0.27□□□□□ -2.45
VPS28YPL065W PAU23Q07987 124 aa-0.27□□□□□ -2.45
VPS28YPL065W PAU17Q12370 124 aa-0.27□□□□□ -2.45
VPS28YPL065W YDR381C-AQ3E6R5 114 aa-0.27□□□□□ -2.45
VPS28YPL065W YCR108CQ3E819 63 aa-0.27□□□□□ -2.45
VPS28YPL065W ECM29P38737 1868 aa-0.27□□□□□ -2.45
VPS28YPL065W STT4P37297 1900 aa-0.28□□□□□ -2.45
VPS28YPL065W SWR1Q05471 1514 aa-0.29□□□□□ -2.46
VPS28YPL065W YGR025WP53216 100 aa-0.32□□□□□ -2.46
VPS28YPL065W YMR082CQ04276 118 aa-0.32□□□□□ -2.46
VPS28YPL065W YCR075W-AQ3E830 75 aa-0.32□□□□□ -2.46
VPS28YPL065W ECM12O13529 151 aa-0.36□□□□□ -2.47
VPS28YPL065W YCL001W-BQ96VH2 84 aa-0.36□□□□□ -2.47
VPS28YPL065W MOT1P32333 1867 aa-0.37□□□□□ -2.47
VPS28YPL065W EDC1P53080 175 aaPredicted RBP-0.38□□□□□ -2.47
VPS28YPL065W YPR108W-AQ3E7B3 70 aa-0.38□□□□□ -2.47
VPS28YPL065W NOP10Q6Q547 58 aaPredicted RBP-0.38□□□□□ -2.47
VPS28YPL065W TEL1P38110 2787 aa-0.38□□□□□ -2.47
VPS28YPL065W UTP20P35194 2493 aaKnown RBP-0.39□□□□□ -2.47
VPS28YPL065W YCR085WP25650 117 aa-0.39□□□□□ -2.47
VPS28YPL065W YMR175W-AQ3E766 64 aa-0.39□□□□□ -2.47
VPS28YPL065W TY1B-DR5P0C2I2 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-PR1P0C2I9 1755 aaKnown RBP-0.4□□□□□ -2.47
VPS28YPL065W TY1B-JR1P47098 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-ML2Q03434 1755 aaKnown RBP-0.4□□□□□ -2.47
VPS28YPL065W TY1B-ER1Q03612 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-ER2Q03619 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-DR1Q03855 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-ML1Q04711 1755 aaKnown RBP-0.4□□□□□ -2.47
VPS28YPL065W TY1B-LR1Q12088 1755 aaKnown RBP-0.4□□□□□ -2.47
VPS28YPL065W TY1B-GR2Q12269 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-OLQ12273 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W TY1B-DR3Q99231 1755 aa-0.4□□□□□ -2.47
VPS28YPL065W YPR117WQ06116 2489 aa-0.42□□□□□ -2.48
VPS28YPL065W MDN1Q12019 4910 aaKnown RBP-0.42□□□□□ -2.48
VPS28YPL065W YBR032WP38223 100 aa-0.43□□□□□ -2.48
VPS28YPL065W GCN1P33892 2672 aaKnown RBP-0.43□□□□□ -2.48
VPS28YPL065W DYN1P36022 4092 aa-0.43□□□□□ -2.48
VPS28YPL065W PMD1P32634 1753 aa-0.44□□□□□ -2.48
VPS28YPL065W YOR343CQ12484 108 aa-0.44□□□□□ -2.48
VPS28YPL065W YIL156W-BQ2V2P4 73 aa-0.44□□□□□ -2.48
VPS28YPL065W YKL068W-AQ3E826 78 aa-0.44□□□□□ -2.48
VPS28YPL065W FMP27Q06179 2628 aa-0.45□□□□□ -2.48
VPS28YPL065W YBL044WP38194 122 aa-0.45□□□□□ -2.48
VPS28YPL065W TOR1P35169 2470 aa-0.46□□□□□ -2.48
VPS28YPL065W UTP10P42945 1769 aaKnown RBP-0.46□□□□□ -2.48
VPS28YPL065W XRN1P22147 1528 aaKnown RBP-0.46□□□□□ -2.48
VPS28YPL065W TOR2P32600 2474 aaKnown RBP-0.46□□□□□ -2.48
VPS28YPL065W YDR246W-AQ3E763 66 aa-0.47□□□□□ -2.48
VPS28YPL065W YOL097W-AQ3E7Y9 61 aa-0.47□□□□□ -2.48
VPS28YPL065W RPO21P04050 1733 aaKnown RBP-0.52□□□□□ -2.49
VPS28YPL065W MEC1P38111 2368 aa-0.53□□□□□ -2.49
VPS28YPL065W RPS29AP41057 56 aaKnown RBP-0.53□□□□□ -2.49
VPS28YPL065W YHR050W-AQ05451 56 aa-0.53□□□□□ -2.49
VPS28YPL065W YGL194C-AQ2V2P6 80 aa-0.55□□□□□ -2.5
Retrieved 100 of 5,963 RNA–protein pairs in 13 ms