RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ATX1P38636 73 aa0.69□□□□□ -2.3
UPF3YGR072W RPL38P49167 78 aaKnown RBP0.69□□□□□ -2.3
UPF3YGR072W BSC4P53841 131 aa0.68□□□□□ -2.3
UPF3YGR072W YNL042W-BQ3E7Z2 85 aa0.68□□□□□ -2.3
UPF3YGR072W RPA190P10964 1664 aaKnown RBP0.68□□□□□ -2.3
UPF3YGR072W COX7P10174 60 aa0.67□□□□□ -2.3
UPF3YGR072W YCL001W-BQ96VH2 84 aa0.67□□□□□ -2.3
UPF3YGR072W TY1B-BLQ12490 1755 aa0.67□□□□□ -2.3
UPF3YGR072W YCR075W-AQ3E830 75 aa0.66□□□□□ -2.3
UPF3YGR072W ECM12O13529 151 aa0.64□□□□□ -2.31
UPF3YGR072W YJR107C-AP0CT86 78 aa0.64□□□□□ -2.31
UPF3YGR072W Q0032Q9ZZX7 96 aa0.64□□□□□ -2.31
UPF3YGR072W NHP2P32495 156 aaPredicted RBP0.63□□□□□ -2.31
UPF3YGR072W TOM6P33448 61 aa0.62□□□□□ -2.31
UPF3YGR072W SCP1Q08873 200 aa0.62□□□□□ -2.31
UPF3YGR072W YBR201C-AQ2V2Q3 67 aa0.62□□□□□ -2.31
UPF3YGR072W GDB1Q06625 1536 aa0.62□□□□□ -2.31
UPF3YGR072W YMR082CQ04276 118 aa0.61□□□□□ -2.31
UPF3YGR072W YKL068W-AQ3E826 78 aa0.61□□□□□ -2.31
UPF3YGR072W PDR10P51533 1564 aa0.61□□□□□ -2.31
UPF3YGR072W YHR214C-DP0CX93 97 aa0.6□□□□□ -2.31
UPF3YGR072W POL1P13382 1468 aa0.6□□□□□ -2.31
UPF3YGR072W SWR1Q05471 1514 aa0.59□□□□□ -2.31
UPF3YGR072W YFR009W-AP0C5M9 85 aa0.59□□□□□ -2.31
UPF3YGR072W YBR016WP38216 128 aa0.59□□□□□ -2.31
UPF3YGR072W YAL065CO13511 128 aa0.58□□□□□ -2.32
UPF3YGR072W YMR122W-AQ3E842 84 aa0.58□□□□□ -2.32
UPF3YGR072W FPR2P32472 135 aa0.56□□□□□ -2.32
UPF3YGR072W DNF3Q12674 1656 aa0.56□□□□□ -2.32
UPF3YGR072W ATP18P81450 59 aa0.55□□□□□ -2.32
UPF3YGR072W YOR343CQ12484 108 aa0.54□□□□□ -2.32
UPF3YGR072W YMR175W-AQ3E766 64 aa0.54□□□□□ -2.32
UPF3YGR072W SDH6Q3E785 79 aa0.54□□□□□ -2.32
UPF3YGR072W YIL134C-AQ45U18 67 aa0.54□□□□□ -2.32
UPF3YGR072W TY1B-BRQ12193 1756 aa0.53□□□□□ -2.32
UPF3YGR072W PAU23Q07987 124 aa0.53□□□□□ -2.32
UPF3YGR072W PAU17Q12370 124 aa0.53□□□□□ -2.32
UPF3YGR072W LTE1P07866 1435 aa0.51□□□□□ -2.33
UPF3YGR072W YGL194C-AQ2V2P6 80 aa0.51□□□□□ -2.33
UPF3YGR072W YOL097W-AQ3E7Y9 61 aa0.5□□□□□ -2.33
UPF3YGR072W SGF11Q03067 99 aa0.49□□□□□ -2.33
UPF3YGR072W TAO3P40468 2376 aa0.47□□□□□ -2.33
UPF3YGR072W YCR085WP25650 117 aa0.47□□□□□ -2.33
UPF3YGR072W NOP10Q6Q547 58 aaPredicted RBP0.47□□□□□ -2.33
UPF3YGR072W SKI3P17883 1432 aaKnown RBP0.47□□□□□ -2.33
UPF3YGR072W EDC1P53080 175 aaPredicted RBP0.46□□□□□ -2.34
UPF3YGR072W YOR105WQ08504 108 aa0.46□□□□□ -2.34
UPF3YGR072W YBR032WP38223 100 aa0.45□□□□□ -2.34
UPF3YGR072W YKL065W-AQ2V2P2 73 aa0.45□□□□□ -2.34
UPF3YGR072W YGR025WP53216 100 aa0.44□□□□□ -2.34
UPF3YGR072W YPR108W-AQ3E7B3 70 aa0.44□□□□□ -2.34
UPF3YGR072W TY1B-PR2P0C2J0 1756 aa0.44□□□□□ -2.34
UPF3YGR072W YSP2Q06681 1438 aa0.43□□□□□ -2.34
UPF3YGR072W TY1B-DR6P0C2I3 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-LR2P0C2I5 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-PR3P0C2J1 1755 aaKnown RBP0.42□□□□□ -2.34
UPF3YGR072W TY1B-JR2P47100 1755 aaKnown RBP0.42□□□□□ -2.34
UPF3YGR072W TY1B-MR1Q04214 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-MR2Q04670 1755 aaKnown RBP0.42□□□□□ -2.34
UPF3YGR072W TY1B-NL1Q12112 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-GR1Q12141 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-GR3Q12316 1755 aa0.42□□□□□ -2.34
UPF3YGR072W TY1B-PLQ12414 1755 aaKnown RBP0.42□□□□□ -2.34
UPF3YGR072W TY1B-ORQ92393 1755 aa0.42□□□□□ -2.34
UPF3YGR072W CWP2P43497 92 aa0.42□□□□□ -2.34
UPF3YGR072W YDR381C-AQ3E6R5 114 aa0.42□□□□□ -2.34
UPF3YGR072W MOT1P32333 1867 aa0.41□□□□□ -2.34
UPF3YGR072W ECM29P38737 1868 aa0.41□□□□□ -2.34
UPF3YGR072W HKR1P41809 1802 aa0.41□□□□□ -2.34
UPF3YGR072W YIL156W-BQ2V2P4 73 aa0.4□□□□□ -2.35
UPF3YGR072W YOR314WQ12506 109 aa0.39□□□□□ -2.35
UPF3YGR072W TY1B-LR3P0C2I6 1755 aaKnown RBP0.38□□□□□ -2.35
UPF3YGR072W ESC1Q03661 1658 aaKnown RBP0.38□□□□□ -2.35
UPF3YGR072W STT4P37297 1900 aa0.38□□□□□ -2.35
UPF3YGR072W XRN1P22147 1528 aaKnown RBP0.38□□□□□ -2.35
UPF3YGR072W POC4Q12245 148 aaPredicted RBP0.36□□□□□ -2.35
UPF3YGR072W YPR145C-AQ2V2P0 78 aa0.35□□□□□ -2.35
UPF3YGR072W MMS22Q06164 1454 aa0.34□□□□□ -2.36
UPF3YGR072W UTP10P42945 1769 aaKnown RBP0.32□□□□□ -2.36
UPF3YGR072W TY1B-DR5P0C2I2 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-PR1P0C2I9 1755 aaKnown RBP0.32□□□□□ -2.36
UPF3YGR072W TY1B-JR1P47098 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-ML2Q03434 1755 aaKnown RBP0.32□□□□□ -2.36
UPF3YGR072W TY1B-ER1Q03612 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-ER2Q03619 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-DR1Q03855 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-ML1Q04711 1755 aaKnown RBP0.32□□□□□ -2.36
UPF3YGR072W TY1B-LR1Q12088 1755 aaKnown RBP0.32□□□□□ -2.36
UPF3YGR072W TY1B-GR2Q12269 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-OLQ12273 1755 aa0.32□□□□□ -2.36
UPF3YGR072W TY1B-DR3Q99231 1755 aa0.32□□□□□ -2.36
UPF3YGR072W YCR108CQ3E819 63 aa0.31□□□□□ -2.36
UPF3YGR072W YBL044WP38194 122 aa0.3□□□□□ -2.36
UPF3YGR072W SWM2P40342 146 aa0.3□□□□□ -2.36
UPF3YGR072W BPH1P25356 2167 aa0.3□□□□□ -2.36
UPF3YGR072W ESP1Q03018 1630 aa0.29□□□□□ -2.36
UPF3YGR072W YDL022C-AP0C5L6 82 aa0.28□□□□□ -2.36
UPF3YGR072W QCR9P22289 66 aa0.28□□□□□ -2.36
UPF3YGR072W YDR246W-AQ3E763 66 aa0.27□□□□□ -2.37
UPF3YGR072W MMS1Q06211 1407 aa0.27□□□□□ -2.37
Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms