RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W RPL33BP41056 107 aaKnown RBP1.32□□□□□ -2.2
SIR4YDR227W POP3P53833 195 aaPredicted RBP1.32□□□□□ -2.2
SIR4YDR227W YDR029WQ12111 104 aa1.32□□□□□ -2.2
SIR4YDR227W YKL023C-AQ2V2P3 75 aa1.32□□□□□ -2.2
SIR4YDR227W RPS25AQ3E792 108 aaPredicted RBP1.32□□□□□ -2.2
SIR4YDR227W HMRA1P0CY11 126 aa1.31□□□□□ -2.2
SIR4YDR227W GPI11Q06636 219 aa1.31□□□□□ -2.2
SIR4YDR227W YGL041C-BQ3E750 60 aa1.31□□□□□ -2.2
SIR4YDR227W COA6Q3E846 104 aa1.31□□□□□ -2.2
SIR4YDR227W PFY1P07274 126 aa1.31□□□□□ -2.2
SIR4YDR227W SNN1P48232 102 aa1.31□□□□□ -2.2
SIR4YDR227W ATG41Q12048 136 aa1.31□□□□□ -2.2
SIR4YDR227W AIM19P40502 157 aa1.3□□□□□ -2.2
SIR4YDR227W TVP15Q03860 143 aa1.3□□□□□ -2.2
SIR4YDR227W PPT2Q12036 173 aa1.3□□□□□ -2.2
SIR4YDR227W SKI6P46948 246 aaPredicted RBP1.3□□□□□ -2.2
SIR4YDR227W ICS3P47034 131 aa1.3□□□□□ -2.2
SIR4YDR227W RPS11AP0CX47 156 aaKnown RBP1.3□□□□□ -2.2
SIR4YDR227W RPS11BP0CX48 156 aaKnown RBP1.3□□□□□ -2.2
SIR4YDR227W YOR376W-AQ3E805 51 aa1.3□□□□□ -2.2
SIR4YDR227W YML079WQ03629 201 aa1.3□□□□□ -2.2
SIR4YDR227W ATP20Q12233 115 aa1.3□□□□□ -2.2
SIR4YDR227W CYB5P40312 120 aa1.29□□□□□ -2.2
SIR4YDR227W IMP2P46972 177 aa1.29□□□□□ -2.2
SIR4YDR227W YER078W-AQ3E7A2 54 aa1.29□□□□□ -2.2
SIR4YDR227W COX8P04039 78 aa1.29□□□□□ -2.2
SIR4YDR227W SMD3P43321 101 aaKnown RBP1.29□□□□□ -2.2
SIR4YDR227W YFL012WP43580 148 aa1.29□□□□□ -2.2
SIR4YDR227W TIR3P40552 269 aa1.29□□□□□ -2.2
SIR4YDR227W YFL041W-AQ3E817 63 aa1.29□□□□□ -2.2
SIR4YDR227W YOR314WQ12506 109 aa1.28□□□□□ -2.2
SIR4YDR227W YBR209WP38311 105 aa1.28□□□□□ -2.2
SIR4YDR227W YGR269WP40326 108 aa1.28□□□□□ -2.2
SIR4YDR227W VMA21P41806 77 aa1.28□□□□□ -2.2
SIR4YDR227W YGL149WP53116 101 aa1.28□□□□□ -2.2
SIR4YDR227W YDR102CQ03864 110 aa1.28□□□□□ -2.2
SIR4YDR227W CUE4Q04201 117 aaPredicted RBP1.28□□□□□ -2.2
SIR4YDR227W LST8P41318 303 aa1.28□□□□□ -2.21
SIR4YDR227W DAD3P69850 94 aa1.28□□□□□ -2.21
SIR4YDR227W YAL064WP39711 94 aa1.27□□□□□ -2.21
SIR4YDR227W ICY1Q04329 127 aa1.27□□□□□ -2.21
SIR4YDR227W YKL065W-AQ2V2P2 73 aa1.27□□□□□ -2.21
SIR4YDR227W YLR236CA0A023PZG4 107 aa1.27□□□□□ -2.21
SIR4YDR227W YPR096CO13587 100 aa1.27□□□□□ -2.21
SIR4YDR227W HSP10P38910 106 aa1.27□□□□□ -2.21
SIR4YDR227W MPC3P53311 146 aa1.27□□□□□ -2.21
SIR4YDR227W QCR8P08525 94 aa1.27□□□□□ -2.21
SIR4YDR227W YJL144WP47009 104 aa1.27□□□□□ -2.21
SIR4YDR227W YDR381C-AQ3E6R5 114 aa1.27□□□□□ -2.21
SIR4YDR227W DDR48P18899 430 aaKnown RBP1.26□□□□□ -2.21
SIR4YDR227W MRPL27P36526 146 aaPredicted RBP1.26□□□□□ -2.21
SIR4YDR227W CYT2Q00873 224 aa1.26□□□□□ -2.21
SIR4YDR227W RRT15Q3E811 62 aa1.26□□□□□ -2.21
SIR4YDR227W INO4P13902 151 aa1.26□□□□□ -2.21
SIR4YDR227W YKL044WP36092 106 aa1.26□□□□□ -2.21
SIR4YDR227W MIC27P50945 234 aa1.26□□□□□ -2.21
SIR4YDR227W MRPL38P35996 138 aaPredicted RBP1.26□□□□□ -2.21
SIR4YDR227W YNL198CP40166 100 aa1.26□□□□□ -2.21
SIR4YDR227W ATG8P38182 117 aaRIP-Chip data1.25□□□□□ -2.21not detected
SIR4YDR227W KRE9P39005 276 aa1.25□□□□□ -2.21
SIR4YDR227W YPL261CQ08976 102 aa1.25□□□□□ -2.21
SIR4YDR227W ECM19Q06011 112 aa1.25□□□□□ -2.21
SIR4YDR227W COX19Q3E731 98 aa1.25□□□□□ -2.21
SIR4YDR227W YHR022CP38763 256 aa1.25□□□□□ -2.21
SIR4YDR227W RSM18P40033 138 aa1.25□□□□□ -2.21
SIR4YDR227W YLR363W-AQ3E747 85 aa1.25□□□□□ -2.21
SIR4YDR227W RPL36BO14455 100 aaKnown RBP1.25□□□□□ -2.21
SIR4YDR227W RPL36AP05745 100 aaPredicted RBP1.25□□□□□ -2.21
SIR4YDR227W YHL042WP38729 150 aa1.25□□□□□ -2.21
SIR4YDR227W YFL065CP43539 102 aa1.25□□□□□ -2.21
SIR4YDR227W YPR203WQ08994 102 aa1.25□□□□□ -2.21
SIR4YDR227W SCS22Q6Q595 175 aa1.25□□□□□ -2.21
SIR4YDR227W THG1P53215 237 aaKnown RBP1.24□□□□□ -2.21
SIR4YDR227W YHR007C-AQ07074 71 aa1.24□□□□□ -2.21
SIR4YDR227W YDR034C-AP0C289 58 aa1.24□□□□□ -2.21
SIR4YDR227W HPA3P39979 161 aa1.24□□□□□ -2.21
SIR4YDR227W MRP17P28778 131 aa1.24□□□□□ -2.21
SIR4YDR227W FAS1P07149 2051 aaKnown RBP1.23□□□□□ -2.21
SIR4YDR227W PAI3P01094 68 aa1.23□□□□□ -2.21
SIR4YDR227W MRX7P53869 86 aa1.23□□□□□ -2.21
SIR4YDR227W LCL2Q08045 131 aa1.23□□□□□ -2.21
SIR4YDR227W COA3Q3E7B2 85 aa1.23□□□□□ -2.21
SIR4YDR227W VMA9Q3E7B6 73 aa1.23□□□□□ -2.21
SIR4YDR227W COX7P10174 60 aa1.22□□□□□ -2.21
SIR4YDR227W YLR307C-AQ3E825 87 aa1.22□□□□□ -2.21
SIR4YDR227W PAU15P40585 124 aa1.22□□□□□ -2.21
SIR4YDR227W YPR145C-AQ2V2P0 78 aa1.22□□□□□ -2.21
SIR4YDR227W YNL146C-AQ3E7Z1 64 aa1.22□□□□□ -2.21
SIR4YDR227W SUS1Q6WNK7 96 aa1.22□□□□□ -2.21
SIR4YDR227W BPH1P25356 2167 aa1.22□□□□□ -2.21
SIR4YDR227W CYR1P08678 2026 aaKnown RBP1.22□□□□□ -2.21
SIR4YDR227W GCV3P39726 170 aaPredicted RBP1.22□□□□□ -2.21
SIR4YDR227W YNR034W-AQ3E841 98 aa1.22□□□□□ -2.21
SIR4YDR227W FPR2P32472 135 aa1.21□□□□□ -2.22
SIR4YDR227W YNL122CP53921 115 aaPredicted RBP1.21□□□□□ -2.22
SIR4YDR227W HRT1Q08273 121 aa1.21□□□□□ -2.22
SIR4YDR227W YDR010CQ12426 110 aa1.21□□□□□ -2.22
SIR4YDR227W YDR182W-AQ3E796 67 aa1.21□□□□□ -2.22
SIR4YDR227W PAU2P32612 120 aa1.21□□□□□ -2.22
SIR4YDR227W SMT3Q12306 101 aaKnown RBP1.21□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 6.7 ms