RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ANKK1Q8NFD2 765 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SEMA4CQ9C0C4 833 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NIF3L1Q9GZT8 377 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL31Q9H511 634 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC87Q9NVE4 849 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 OBP2AQ9NY56 170 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF223Q9UK11 482 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ADAMTS8Q9UP79 889 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 LOC100506127A0A0U1RQW1 187 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 EXOC3O60645 756 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CRCPO75575 148 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 IL1R1P14778 569 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CASP14P31944 242 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RCVRNP35243 200 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCR9P51686 369 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 DPYDQ12882 1025 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SMCO1Q147U7 214 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 VANGL1Q8TAA9 524 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SCFD2Q8WU76 684 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC90BQ9GZT6 254 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ACTR5Q9H9F9 607 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ABCB10Q9NRK6 738 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SNTG1Q9NSN8 517 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 WDR35Q9P2L0 1181 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TTC21BQ7Z4L5 1316 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 KANK1Q14678 1352 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 EFCAB14O75071 495 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CNOT3O75175 753 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NIPSNAP2O75323 286 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NPTXRO95502 500 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ESRRBO95718 433 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 POU1F1P28069 291 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GNG10P50151 68 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 VPS72Q15906 364 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TCEAL6Q6IPX3 200 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 UBE2R2Q712K3 238 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MIB1Q86YT6 1006 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TMTC1Q8IUR5 882 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MAPKAPK5Q8IW41 473 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 HIPK2Q9H2X6 1198 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PYCARDQ9ULZ3 195 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SCN3AQ9NY46 2000 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 C12orf71A8MTZ7 269 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RAC2P15153 192 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ATP6V1B2P21281 511 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 AZGP1P25311 298 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 HNMTP50135 292 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 UBE2HP62256 183 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCNA1P78396 465 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TICAM1Q8IUC6 712 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 TUSC5Q8IXB3 177 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CNBD1Q8NA66 436 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CAMKVQ8NCB2 501 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 OR6B3Q8NGW1 331 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 HPS1Q92902 700 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 AK8Q96MA6 479 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PCMTD2Q9NV79 361 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 IMPAD1Q9NX62 359 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 POLHQ9Y253 713 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 IFNA16P05015 189 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CRKLP46109 303 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MTIF2P46199 727 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CPA2P48052 419 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ACY1Q03154 408 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PWP1Q13610 501 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SLC12A1Q13621 1099 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SLC14A2Q15849 920 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CEP68Q76N32 757 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 BRAPQ7Z569 592 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SETD3Q86TU7 594 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NLRP10Q86W26 655 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 VSTM4Q8IW00 320 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 METTL21AQ8WXB1 218 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NAF1Q96HR8 494 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 EPS8L2Q9H6S3 715 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RIC8BQ9NVN3 520 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ZMIZ1Q9ULJ6 1067 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ATXN7L1Q9ULK2 861 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 RNF112Q9ULX5 631 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NFE2L3Q9Y4A8 694 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 FER1L5A0AVI2 2057 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 POTECB2RU33 542 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 UPP2O95045 317 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 PIK3CGP48736 1102 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 MCL1Q07820 350 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 LRRC36Q1X8D7 754 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ATG9BQ674R7 924 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SHCBP1Q8NEM2 672 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 WASF1Q92558 559 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GAREM1Q9H706 876 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 POLMQ9NP87 494 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GJB4Q9NTQ9 266 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 NSMCE4AQ9NXX6 385 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CD274Q9NZQ7 290 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 SERPINB2P05120 415 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 ATP2A2P16615 1042 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 GALNSP34059 522 aa3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCT4P50991 539 aaKnown RBP3.7□□□□□ -1.82
SCN1A-221ENST00000641996 CCR4P51679 360 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms