RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MAN1C1Q9NR34 630 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 C20orf96Q9NUD7 363 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 RNF103-CHMP3A0A140T963 221 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 CAPN8A6NHC0 703 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 NFIBO00712 420 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 MED7O43513 233 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 LYPLA1O75608 230 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 PSAPP07602 524 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SRGAP2BP0DMP2 458 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 ALDH1B1P30837 517 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 DSG3P32926 999 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 KRT76Q01546 638 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SPIRE1Q08AE8 756 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 MYBPC2Q14324 1141 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 RPS6KA2Q15349 733 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 FASTKD1Q53R41 847 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 GRAMD4Q6IC98 578 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SLFN12LQ6IEE8 588 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SESTD1Q86VW0 696 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 ZBTB8OSQ8IWT0 167 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 ZNF398Q8TD17 642 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 PSPC1Q8WXF1 523 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 ANKRD36BP1Q96IX9 119 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 MIPEPQ99797 713 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 DCUN1D5Q9BTE7 237 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 IL1RAPL1Q9NZN1 696 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 HESX1Q9UBX0 185 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 GRID1Q9ULK0 1009 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 PAIP2BQ9ULR5 123 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 ARHGAP26Q9UNA1 814 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 TPST1O60507 370 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 FDX1P10109 184 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 PPIDQ08752 370 aaKnown RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 FNBP1LQ5T0N5 605 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 DHDDSQ86SQ9 333 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 FAM160B2Q86V87 743 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 SATL1Q86VE3 508 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 UBA3Q8TBC4 463 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 PTPRN2Q92932 1015 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 NR1H4Q96RI1 486 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 CRAMP1Q96RY5 1269 aa11.47□□□□□ -0.57
CLN3-244ENST00000636147 TSPYL2Q9H2G4 693 aaPredicted RBP11.47□□□□□ -0.57
CLN3-244ENST00000636147 MROH7Q68CQ1 1323 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 TCRBV9S1A1TA0A576 114 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 OAS1P00973 400 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 T-ENOLP0DO92 83 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 TCF4P15884 667 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 GNAZP19086 355 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 ADARP55265 1226 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 PKNOX1P55347 436 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 CDC16Q13042 620 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 GSTA3Q16772 222 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 EML3Q32P44 896 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 NPNTQ6UXI9 565 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 SLC9A9Q8IVB4 645 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 HELQQ8TDG4 1101 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 TAAR1Q96RJ0 339 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 ETNK2Q9NVF9 386 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 DMAC2Q9NW81 257 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 WRAP73Q9P2S5 460 aaPredicted RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 HERC5Q9UII4 1024 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 PPM1HQ9ULR3 514 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 RPL26L1Q9UNX3 145 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 MYO5AQ9Y4I1 1855 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 LDHAP00338 332 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 MCF2P10911 925 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 GALK1P51570 392 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 ITGA9Q13797 1035 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 HEATR6Q6AI08 1181 aaKnown RBP11.46□□□□□ -0.57
CLN3-244ENST00000636147 PTF1AQ7RTS3 328 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 UNC45BQ8IWX7 931 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 CDAN1Q8IWY9 1227 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 C7orf43Q8WVR3 580 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 SIKE1Q9BRV8 207 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 GPR88Q9GZN0 384 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 GTSE1Q9NYZ3 720 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 COMMD3-BMI1R4GMX3 469 aa11.46□□□□□ -0.57
CLN3-244ENST00000636147 BCL9LQ86UU0 1499 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 UMODL1Q5DID0 1318 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 TMCC1O94876 653 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 CIITAP33076 1130 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 GPC3P51654 580 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 HADHBP55084 474 aaKnown RBP11.46□□□□□ -0.58
CLN3-244ENST00000636147 NLRP11P59045 1033 aaKnown RBP11.46□□□□□ -0.58
CLN3-244ENST00000636147 GCNT1Q02742 428 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 SGSM1Q2NKQ1 1148 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 TKFCQ3LXA3 575 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 IL31Q6EBC2 164 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 NET1Q7Z628 596 aaPredicted RBP11.46□□□□□ -0.58
CLN3-244ENST00000636147 CXorf38Q8TB03 319 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 EFHD1Q9BUP0 239 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 COPS7BQ9H9Q2 264 aaPredicted RBP11.46□□□□□ -0.58
CLN3-244ENST00000636147 PREBQ9HCU5 417 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 KCNK4Q9NYG8 393 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 ATXN10Q9UBB4 475 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 FBXO40Q9UH90 709 aa11.46□□□□□ -0.58
CLN3-244ENST00000636147 MYH1P12882 1939 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 MYH4Q9Y623 1939 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 ATP9BO43861 1147 aa11.45□□□□□ -0.58
CLN3-244ENST00000636147 PEX2P28328 305 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms