RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 IDI2Q9BXS1 227 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 PACSIN1Q9BY11 444 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 RAB34Q9BZG1 259 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 KLC2Q9H0B6 622 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 GOLPH3Q9H4A6 298 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 Q9H521 79 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 ZFYVE28Q9HCC9 887 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 OLFML3Q9NRN5 406 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 DNAJC17Q9NVM6 304 aaKnown RBP10.65□□□□□ -0.7
VPS39-214ENST00000614932 IGSF9Q9P2J2 1179 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 GNPTGQ9UJJ9 305 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 EXOC7Q9UPT5 735 aa10.65□□□□□ -0.7
VPS39-214ENST00000614932 BICDL2A1A5D9 508 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 FAM47DPA6NHR8 397 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 ARHGAP33O14559 1287 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 ICMTO60725 284 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 MED24O75448 989 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 TRPA1O75762 1119 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 RBP3P10745 1247 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 THRAP10827 490 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 BMP3P12645 472 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 ADSLP30566 484 aaPredicted RBP10.65□□□□□ -0.71
VPS39-214ENST00000614932 ERFP50548 548 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 NCKAP1LP55160 1127 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 LRRC63Q05C16 580 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 USP41Q3LFD5 358 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 BTBD8Q5XKL5 378 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 POTEAQ6S8J7 498 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 TMEM179Q6ZVK1 233 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 EPM2AIP1Q7L775 607 aaPredicted RBP10.65□□□□□ -0.71
VPS39-214ENST00000614932 FBXO11Q86XK2 927 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 CLVS1Q8IUQ0 354 aaPredicted RBP10.65□□□□□ -0.71
VPS39-214ENST00000614932 ANKRD35Q8N283 1001 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 GDPD5Q8WTR4 605 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 XAB2Q9HCS7 855 aaKnown RBP10.65□□□□□ -0.71
VPS39-214ENST00000614932 S100A14Q9HCY8 104 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 FBXO28Q9NVF7 368 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 COMMD8Q9NX08 183 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 GPRC5DQ9NZD1 345 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 PKD2L1Q9P0L9 805 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 SERPINA10Q9UK55 444 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 PADI4Q9UM07 663 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.65□□□□□ -0.71
VPS39-214ENST00000614932 ACTL7BQ9Y614 415 aa10.65□□□□□ -0.71
VPS39-214ENST00000614932 NRXN2Q9P2S2 1712 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 SFI1A8K8P3 1242 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 FAM86B1E9PN63 330 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 SIN3BO75182 1162 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 FGGP02679 453 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 FAM86B2P0C5J1 330 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 P4HA1P13674 534 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 TLR1Q15399 786 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 PTPROQ16827 1216 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 ZFYVE27Q5T4F4 411 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 C1orf146Q5VVC0 180 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 TATDN1Q6P1N9 297 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 SRRM1Q8IYB3 904 aaKnown RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 REM2Q8IYK8 340 aaPredicted RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 GALNT4Q8N4A0 578 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 NATD1Q8N6N6 113 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 GLG1Q92896 1179 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 C10orf88Q9H8K7 445 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 THAP1Q9NVV9 213 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 TMOD2Q9NZR1 351 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 NYAP2Q9P242 653 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 SMCHD1A6NHR9 2005 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 HAT1O14929 419 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 B4GALT4O60513 344 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 DDHD2O94830 711 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 C6orf222P0C671 652 aaPredicted RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 GLULP15104 373 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 DPEP1P16444 411 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 ZNF76P36508 570 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 HSPA14Q0VDF9 509 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 EFTUD2Q15029 972 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS39-214ENST00000614932 DLGAP5Q15398 846 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 RGS21Q2M5E4 152 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 Q3C1V9 767 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 CDONQ4KMG0 1287 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 ZNF598Q86UK7 904 aaKnown RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 GPBP1Q86WP2 473 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 VPS37AQ8NEZ2 397 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 TOR1AIP2Q8NFQ8 470 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 LILRB1Q8NHL6 650 aaPredicted RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 ATL1Q8WXF7 558 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 SYN2Q92777 582 aaPredicted RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 ERLEC1Q96DZ1 483 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 AMNQ9BXJ7 453 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 OSBPL8Q9BZF1 889 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 MARCH7Q9H992 704 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 STK17AQ9UEE5 414 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 POU2F3Q9UKI9 436 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 ATF5Q9Y2D1 282 aaPredicted RBP10.64□□□□□ -0.71
VPS39-214ENST00000614932 NR2E1Q9Y466 385 aa10.64□□□□□ -0.71
VPS39-214ENST00000614932 KRBA1A5PL33 1030 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 hCG_1984214I3L0E3 225 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 ZBTB39O15060 712 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 PEX1O43933 1283 aa10.63□□□□□ -0.71
VPS39-214ENST00000614932 RSL1D1O76021 490 aaKnown RBP10.63□□□□□ -0.71
VPS39-214ENST00000614932 PLA2G4BP0C869 781 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms