RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 CSGALNACT2Q8N6G5 542 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 ARL14EPQ8N8R7 260 aaPredicted RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 TTC16Q8NEE8 873 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 FOXJ1Q92949 421 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 TCEAL3Q969E4 200 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 C8orf48Q96LL4 319 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 FAM213AQ9BRX8 229 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 SCNM1Q9BWG6 230 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 TTLL2Q9BWV7 592 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 ZDHHC5Q9C0B5 715 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 ELOVL4Q9GZR5 314 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 DNAI2Q9GZS0 605 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 FAM124BQ9H5Z6 455 aaPredicted RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 UPF2Q9HAU5 1272 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 FBRSL1Q9HCM7 1045 aaKnown RBP6.72□□□□□ -1.33
CUX1-220ENST00000607092 GCNT4Q9P109 453 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 GTF3C4Q9UKN8 822 aa6.72□□□□□ -1.33
CUX1-220ENST00000607092 ASCC3Q8N3C0 2202 aaKnown RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 DMXL2Q8TDJ6 3036 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 A0A1W2PQD8 194 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 E2F8A0AVK6 867 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 FAM221BA6H8Z2 402 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ZNF840PA6NDX5 716 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ZNF233A6NK53 670 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 C1QTNF9BB2RNN3 333 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ANKRD63C9JTQ0 380 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 K7EQS6 105 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 LEFTY2O00292 366 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 CDX4O14627 284 aaPredicted RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 DCLK1O15075 740 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 NPC1O15118 1278 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GCNT3O95395 438 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 CYP17A1P05093 508 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 C1QTNF9P0C862 333 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ADH5P11766 374 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GNSP15586 552 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ENGP17813 658 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ZNF132P52740 706 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SNRPFP62306 86 aaKnown RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 IRX4P78413 519 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GAD2Q05329 585 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GOLGA8FQ08AF8 430 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GOLGA8DPQ0D2H9 430 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SEMA3BQ13214 749 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 MCM6Q14566 821 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 DHCR24Q15392 516 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ZC2HC1CQ53FD0 456 aaPredicted RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 WDR45BQ5MNZ6 344 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SYCP2LQ5T4T6 812 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 PEAR1Q5VY43 1037 aaPredicted RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 RRAGBQ5VZM2 374 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 CRELD2Q6UXH1 353 aaPredicted RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 CCDC73Q6ZRK6 1079 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 TTC30AQ86WT1 665 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ADGRG2Q8IZP9 1017 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 C1orf127Q8N9H9 656 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 DEFB124Q8NES8 71 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 MDGA1Q8NFP4 955 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 MYCBPAPQ8TBZ2 947 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 GATA6Q92908 595 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 HPDLQ96IR7 371 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 FIZ1Q96SL8 496 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 CYP2S1Q96SQ9 504 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 KIF2CQ99661 725 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SYT15Q9BQS2 421 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 TPSD1Q9BZJ3 242 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SNX25Q9H3E2 840 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 SMOC1Q9H4F8 434 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.71□□□□□ -1.347e-7■■■■■ 263.4
CUX1-220ENST00000607092 ARHGEF4Q9NR80 690 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 BLOC1S4Q9NUP1 217 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 TMLHEQ9NVH6 421 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 COMMD8Q9NX08 183 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 DEC1Q9P2X7 70 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 LHX6Q9UPM6 363 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 WASF3Q9UPY6 502 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 NFE2L3Q9Y4A8 694 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 PCDHB9Q9Y5E1 797 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 CFAP46Q8IYW2 2715 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 PCNX2A6NKB5 2137 aa6.71□□□□□ -1.34
CUX1-220ENST00000607092 ZNF638Q14966 1978 aaKnown RBP6.71□□□□□ -1.34
CUX1-220ENST00000607092 TBC1D3BA6NDS4 549 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 SRRM3A6NNA2 597 aaPredicted RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 TACC1O75410 805 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 TADA3O75528 432 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 PRPF6O94906 941 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 KLF8O95600 359 aaPredicted RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 OLFM2O95897 454 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 CFIP05156 583 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 WARSP23381 471 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 ADSSP30520 456 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 ATICP31939 592 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 OPRD1P41143 372 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 MAPK8P45983 427 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 TUBP50607 506 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 SEC13P55735 322 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 CYP27A1Q02318 531 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 RPL6Q02878 288 aaKnown RBP6.7□□□□□ -1.34
CUX1-220ENST00000607092 LRSAM1Q6UWE0 723 aa6.7□□□□□ -1.34
CUX1-220ENST00000607092 FILIP1Q7Z7B0 1213 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms